HHsearch alignment of GI: 254780797 and MMDB domain: 2jc4_A_
>2jc4_A (A:) Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.71 E-value=1.5e-16 Score=106.34 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=85.5
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 89988731007677755666766668799999999999751898999972799889998726232216774035787650
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHAM 86 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (231)
|||+||||++ ...+.+.++++|...+|||||||||..............+.+. ..........
T Consensus 1 lrv~t~Ni~~----------------~~~r~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 63 (256)
T 2jc4_A 1 MKITTWNVNS----------------LNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWH-CVWSGQKTYN 63 (256)
T ss_dssp CEEEEEECSC----------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCE-EEEECCSSSC
T ss_pred CEEEEEECCC----------------HHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCHHHHHHCCCC-EEEECCCCCC
T ss_conf 9899998298----------------9999999999998689988999932688100897786102452-0220122332
Q ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 35688614641010000122146756554457504999998499789999975116888875430025457887548999
Q gi|254780797|r 87 HTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATW 166 (231)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~ 166 (231)
..+++++............. .....+.. ......+ +.+.+.+....... .......+..|...
T Consensus 64 g~~i~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 126 (256)
T 2jc4_A 64 GVAIVSRSVPQDVHFGLPAL-------PDDPQRRV--IAATVSG--VRVINVYCVNGEAL------DSPKFKYKEQWFAA 126 (256)
T ss_dssp CEEEEESSCCEEEEESCTTS-------TTCCSCCE--EEEEETT--EEEEEEECCCCCST------TSHHHHHHHHHHHH
T ss_pred CCCCEECCCCCCCCCCCCCC-------CCCCHHCE--EEEECCC--CEEEEEEECCCCCC------CCHHHHHHHHHHHH
T ss_conf 22210002653011235764-------55611215--8874288--08988851268765------32123334455677
Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 999999740488789999136888462
Q gi|254780797|r 167 LKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 167 l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231)
+.+.++.....+.++|++||||.....
T Consensus 127 ~~~~~~~~~~~~~~~i~~gd~N~~~~~ 153 (256)
T 2jc4_A 127 LTEFVRDEMTRHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp HHHHHHHHHTTCSSEEEEEECCCCCSG
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 776666641147763100000124410