HHsearch alignment of GI: 254780797 and MMDB domain: 2o3h_A_
>2o3h_A (A:) DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.67 E-value=1.1e-15 Score=101.68 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=87.7
Q ss_pred CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEE-EC
Q ss_conf 665489988731007677755666766668799999999999751898999972799889--998726232216774-03
Q gi|254780797|r 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYS-GS 79 (231)
Q Consensus 3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~-~~ 79 (231)
..++|||+||||+++ ...+.+.++++|+..+||||||||+..... ...+.....+.+.+. ..
T Consensus 25 ~~~~lkV~T~Nv~~~---------------~~~~~~~~~~~i~~~~pDIi~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (285)
T 2o3h_A 25 KPATLKIASWNVDGL---------------RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP 89 (285)
T ss_dssp CBCCEEEEEEECSSH---------------HHHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB
T ss_pred CCCCEEEEEEEECCH---------------HHHHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEE
T ss_conf 988679999981787---------------77223468999974899899997203682338886761578744666532
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE-EECCEEEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 57876503568861464101000012214675655445750499999-84997899999751168888754300254578
Q gi|254780797|r 80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILF-EVDGRKIWLLDIHLKSFCFLDSIEDSYISSCY 158 (231)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~ 158 (231)
.........+++++............. ........+.... ......+.+.++|+.. ....
T Consensus 90 ~~~~~~~g~~i~sr~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 150 (285)
T 2o3h_A 90 SDKEGYSGVGLLSRQCPLKVSYGIGDE-------EHDQEGRVIVAEFDSFVLVTAYVPNAGRGL------------VRLE 150 (285)
T ss_dssp C--CCSCCEEEEESSCCSEEEESCSCG-------GGSSBCCEEEEECSSCEEEEEECCCCCGGG------------TTHH
T ss_pred CCCCCCCCCCEEECCCCCEEEEEECCC-------CCCCCCEEEEEEEECCEEEEEECCCCCCCC------------HHHH
T ss_conf 012555431013046870368740125-------545422389998504240014225578654------------0123
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 87548999999999740488789999136888462
Q gi|254780797|r 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 159 ~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231)
.+..+.+.+.+.+.+. ....++|++||||.....
T Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~i~~gd~~~~~~~ 184 (285)
T 2o3h_A 151 YRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEE 184 (285)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSCEEEEEECSCCCSG
T ss_pred HHHHEEECCCCCCCCC-CCCCEEEECCCCCCCCCH
T ss_conf 3200110241121112-455337740445457313