HHsearch results for GI: 254780797 and protein with PDBid: 1hd7_A
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=99.59 E-value=3.4e-14 Score=92.95 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=67.8
Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCC
Q ss_conf 548998873100767775566676666879999-9999999751898999972799--8899987262322167740357
Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDY-ALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNT 81 (231)
Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
.+|||+||||+.+. ..+ +.+.++|++.+||||||||+.. ......+....+|.+.+.....
T Consensus 60 ~~mki~swNvnGlr----------------~~~k~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~l~~~~g~~~~y~~~~~ 123 (318)
T 1hd7_A 60 ATLKICSWNVDGLR----------------AWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 123 (318)
T ss_dssp CCEEEEEEECSSHH----------------HHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-
T ss_pred CCEEEEEEECCCHH----------------HHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEEC
T ss_conf 87699999838857----------------61134489999758995899983537801288888951799648999755
Q ss_pred CCCCCE-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 876503-5688614641010000122146756554457504999998499789999975116888875430025457887
Q gi|254780797|r 82 DKHAMH-TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYML 160 (231)
Q Consensus 82 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~ 160 (231)
...+.. .+++++..+...... . ..... ... .........+..+..+.++.... . ......+
T Consensus 124 ~~~~~~~~~~~~k~~~~~v~~~--~----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 185 (318)
T 1hd7_A 124 DKEGYSGVGLLSRQCPLKVSYG--I----GDEEH--DQE-GRVIVAEFDSFVLVTAYVPNAGR--G-------LVRLEYR 185 (318)
T ss_dssp ----CCCEEEEESSCCSEEEES--C----SCGGG--SSS-SCEEEEECSSCEEEEEECCCCCG--G-------GTTHHHH
T ss_pred CCCCCCCEEEEECCCCEEEEEC--C----CCCCC--CCE-EEEEEEEEEEEEEEEEEECCCCC--C-------CHHHHHH
T ss_conf 8777552235732686146743--6----76654--530-05899874359999997146777--5-------3107888
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 548999999999740488789999136888
Q gi|254780797|r 161 NLQATWLKQWVDQKNNLNMPFIIAGDFNRK 190 (231)
Q Consensus 161 ~~q~~~l~~~i~~~~~~~~~vii~GDFN~~ 190 (231)
............ ......++|++||||..
T Consensus 186 ~~~~~~~~~~~~-~~~~~~~~i~~Gd~N~~ 214 (318)
T 1hd7_A 186 QRWDEAFRKFLK-GLASRKPLVLCGDLNVA 214 (318)
T ss_dssp HHHHHHHHHHHH-HHHHHSCEEEEEECSCC
T ss_pred HHHHHHHHHHHH-HHCCCCEEEEECCCCCC
T ss_conf 887777553233-20464338860444458