HHsearch results for GI: 254780797 and protein with PDBid: 1sr4_B
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.71 E-value=3e-17 Score=109.23 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH----CC--CCCEEEEE
Q ss_conf 6548998873100767775566676666879999999999975189899997279988999872----62--32216774
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVF----PN--DKWDILYS 77 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~----~~--~~~~~~~~ 77 (231)
.+.+||+||||+++..... .+...++ ...++...+|||||||||.+........ .. ..+..+..
T Consensus 2 ~~~frv~TwNi~~~~~~~~--------~~~~~~~--~~~~~~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (261)
T 1sr4_B 2 LSDFKVATWNLQGSSAVNE--------SKWNINV--RQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTW 71 (261)
T ss_dssp GGGSCEEEEECCCCSSSSH--------HHHHHHH--HHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEE
T ss_pred CCCCEEEEEECCCCCCCCC--------CCCCHHH--HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 9877899997995878755--------5422899--99997567979999991674234115688776641765330122
Q ss_pred ECCCCCCCCEEEEEEECCCC-----EEEEEECCCC----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCC
Q ss_conf 03578765035688614641-----0100001221----46756554457504999998499789999975116888875
Q gi|254780797|r 78 GSNTDKHAMHTAIVIRKGAI-----HLLQKSYLPM----DTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDS 148 (231)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~ 148 (231)
............++...... ........+. ...........|.++.+.+. ...++++|+.+....+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ils~~~~~~~~~~~~~~~~~~~R~~~~~~~~----~~~~~~~~~~~~~~~~~ 147 (261)
T 1sr4_B 72 NLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIG----TDVFFTVHALATGGSDA 147 (261)
T ss_dssp ESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEEEET----TEEEEEEECCTTTTTTH
T ss_pred ECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEE----CCCEEEEEEECCCCCCC
T ss_conf 02565677515899752345564243799979876333783689766565305999981----35223388645887534
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 430025457887548999999999740488789999136888462
Q gi|254780797|r 149 IEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 149 ~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231)
.. ....+......+.......+.|+|+|||||..+.+
T Consensus 148 -----~~---~~~~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~ 184 (261)
T 1sr4_B 148 -----VS---LIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp -----HH---HHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred -----HH---HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf -----89---99999999999998752568876984345887521