HHsearch results for GI: 254780797 and protein with PDBid: 1wdu_A
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.76 E-value=1.3e-16 Score=105.80 Aligned_cols=143 Identities=16% Similarity=0.065 Sum_probs=85.3
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK 83 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
+.+|||+||||+. .....+.+...|.+.+|||+||||+...... .......+..+... ....
T Consensus 17 g~~~rvl~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~-~~~~~~~~~~~~~~-~~~~ 78 (245)
T 1wdu_A 17 GPPYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGAK-SMKGFRGVRVFQST-AQGD 78 (245)
T ss_dssp -CCEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECC-CCTT
T ss_pred CCCEEEEEECCCC----------------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHCCCCEEEEEE-CCCC
T ss_conf 9987999220499----------------7567999999998629988999869867665-10104553147744-5679
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231)
.....+++++.+........ .......+.+.+..++..+.++++|++...... . .
T Consensus 79 ~~~g~ai~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~-----------~---~ 133 (245)
T 1wdu_A 79 GTVKAAIAVFDHDLDVIQYP-----------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIE-----------S---Y 133 (245)
T ss_dssp CCCCEEEEECCSSCEEEECT-----------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCSH-----------H---H
T ss_pred CCCEEEEEEECCCCCCEEEC-----------CCCCCCEEEEEEEECCEEEEEEEEECCCCCCHH-----------H---H
T ss_conf 98489999946765521303-----------779899689999928932999999669996278-----------9---9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 9999999997404887899991368884
Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231)
Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231)
.+++...+. ...+.++|||||||...
T Consensus 134 ~~~l~~~~~--~~~~~~~Il~GDfN~~~ 159 (245)
T 1wdu_A 134 LEQIKRVER--KMGPKRLIFGGDANAKS 159 (245)
T ss_dssp HHHHHHHHH--TTCSSSEEEEEECCCCC
T ss_pred HHHHHHHHH--HCCCCEEEEEEECCCCC
T ss_conf 999999887--54796499973435365