HHsearch results for GI: 254780797 and protein with PDBid: 3ngq_A
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.88 E-value=1.4e-21 Score=132.34 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=97.4
Q ss_pred CCEEEEEEEEHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHHCCCCCEEEEEE
Q ss_conf 6548998873100--7677755666766668799999999999751898999972799889---9987262322167740
Q gi|254780797|r 4 AQRIRIASWNINN--LSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA---IKRVFPNDKWDILYSG 78 (231)
Q Consensus 4 ~~~lrv~twNi~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~---~~~~~~~~~~~~~~~~ 78 (231)
+.+||||||||.. +.....-...+.....++.+.+.|++.|...+|||||||||++... +...+...+|.+.+..
T Consensus 29 ~~~lrV~SyNVL~~~~~~~~~~~~~~~~~l~~~~R~~~I~~~I~~~~pDII~LQEV~~~~~~~~l~~~l~~~g~~~~~~~ 108 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSP 108 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 98189996685765567733368998166499999999999998669988999747653236999999986298358762
Q ss_pred CCCCC--------CCCEEEEEEECCCCEEEEEECCCCCCCC-----C---------------------CCCCCCCEEEEE
Q ss_conf 35787--------6503568861464101000012214675-----6---------------------554457504999
Q gi|254780797|r 79 SNTDK--------HAMHTAIVIRKGAIHLLQKSYLPMDTEG-----L---------------------DSKAGKRRAVEI 124 (231)
Q Consensus 79 ~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~---------------------~~~~~~r~~~~~ 124 (231)
..... .....+++++.............++... . ............
T Consensus 109 ~~~~~~~~~~~~~~~~gvai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (398)
T 3ngq_A 109 KSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKP 188 (398)
T ss_dssp SCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC------
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEE
T ss_conf 46765445677766630799986676625667788616766666655300110100133210356641135422210221
Q ss_pred EEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCCEEEEEECCCCC
Q ss_conf 998499789999975116888875430025457887548999999999740-------------4887899991368884
Q gi|254780797|r 125 LFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN-------------NLNMPFIIAGDFNRKI 191 (231)
Q Consensus 125 ~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~-------------~~~~~vii~GDFN~~~ 191 (231)
.....+..+.|+|+||++.... ...+..|++.+.++++... ..+.++|+|||||..+
T Consensus 189 ~~~~~~~~~~v~ntHL~~~~~~----------~~~r~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~ 258 (398)
T 3ngq_A 189 IHAADKQLLIVANAHMHWDPEY----------SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258 (398)
T ss_dssp -----CCEEEEEEEECCCCTTC----------HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCT
T ss_pred ECCCCCCEEEEEEECCCCCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf 0157885699999665556653----------078999999999999999987665320123445687448714546787
Q ss_pred CC
Q ss_conf 62
Q gi|254780797|r 192 NH 193 (231)
Q Consensus 192 ~~ 193 (231)
.+
T Consensus 259 ~~ 260 (398)
T 3ngq_A 259 DS 260 (398)
T ss_dssp TS
T ss_pred CC
T ss_conf 64