HHSEARCH alignment of GI: 254780797 and SCOP domain: d2a40b1

Alignment
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.81  E-value=4.2e-19  Score=117.83  Aligned_cols=165  Identities=15%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHH----CC--CCCEEEEEE
Q ss_conf             899887310076777556667666687999999999997518989999727998--8999872----62--322167740
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVF----PN--DKWDILYSG   78 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~----~~--~~~~~~~~~   78 (231)
                      |||+||||++|+..         ..+....++.|++.|+  +|||||||||.+.  ..+..++    ..  ..+.+....
T Consensus         1 lrI~s~Ni~~~~~~---------~~~~~~~~~~l~~~i~--~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   69 (260)
T d2a40b1           1 LKIAAFNIRTFGET---------KMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE   69 (260)
T ss_dssp             CEEEEEEEEEESHH---------HHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred             CEEEEEECCCCCCC---------CCCCHHHHHHHHHHCC--CCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             98999968834778---------6665999999998747--999899996234774169999986431146750367415


Q ss_pred             CC-CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE---CCEEEEEEEEEECCCCCCCCCCCHHH
Q ss_conf             35-787650356886146410100001221467565544575049999984---99789999975116888875430025
Q gi|254780797|r   79 SN-TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEV---DGRKIWLLDIHLKSFCFLDSIEDSYI  154 (231)
Q Consensus        79 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~g~~~~v~n~HL~s~~~~~~~~~~~~  154 (231)
                      .. ........+.++..........................+.+..+.+..   ....+.+++.|+.+.           
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  138 (260)
T d2a40b1          70 PLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS-----------  138 (260)
T ss_dssp             CBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG-----------
T ss_pred             CCCCCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC-----------
T ss_conf             677775431002541254420111200013555676543332310212110345624799986415543-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             45788754899999999974048878999913688846222
Q gi|254780797|r  155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSH  195 (231)
Q Consensus       155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~  195 (231)
                       ....+..|...+.+++... ..+.|+|+|||||..+.+..
T Consensus       139 -~~~~~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~~  177 (260)
T d2a40b1         139 -DAVAEINSLYDVYLDVQQK-WHLNDVMLMGDFNADCSYVT  177 (260)
T ss_dssp             -GHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCSTTTSC
T ss_pred             -HHHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCHH
T ss_conf             -0368888899999999863-45788797665567865234


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Deoxyribonuclease I
species: Cow (Bos taurus) [TaxId: 9913]