HHSEARCH alignment of GI: 254780797 and SCOP domain: d2f1na1

Alignment
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.78  E-value=8e-20  Score=121.67  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH----HHCCCCCEE--EEEE
Q ss_conf             5489988731007677755666766668799999999999751898999972799889998----726232216--7740
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR----VFPNDKWDI--LYSG   78 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~----~~~~~~~~~--~~~~   78 (231)
                      +.|||+||||+++.....          ..........++...+|||||||||++......    .....++.+  +...
T Consensus         3 ~~~rv~TwNi~~~~~~~~----------~~~~~~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (250)
T d2f1na1           3 TDFRVATWNLQGASATTE----------SKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWN   72 (250)
T ss_dssp             GGCCEEEEEEEECTTSCH----------HHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCCC----------CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             788999994797757655----------6555999999986689899999826863343366765443027642002321


Q ss_pred             CCCCCC----------------CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECC
Q ss_conf             357876----------------5035688614641010000122146756554457504999998499789999975116
Q gi|254780797|r   79 SNTDKH----------------AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKS  142 (231)
Q Consensus        79 ~~~~~~----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s  142 (231)
                      ......                ....+++++......         ..........|+++.+.+    ..+.|+|+||++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~---------~~~~~~~~~~r~~~~~~~----~~~~v~n~Hl~~  139 (250)
T d2f1na1          73 LSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEV---------FVLSPVRQGGRPLLGIRI----GNDAFFTAHAIA  139 (250)
T ss_dssp             CCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEE---------EEECCSSTTCCCEEEEEE----TTEEEEEEECCS
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEE---------EECCCCCCCCCCEEEEEE----CEEEEEEEECCC
T ss_conf             3445676326787511454465714599988753056---------751787542211036763----208999998189


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             88887543002545788754899999999974048878999913688846222222
Q gi|254780797|r  143 FCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGI  198 (231)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~~~~  198 (231)
                      ....+.         ..+..+++.+.+.+.....+..|+|+|||||..+.+.....
T Consensus       140 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~~~~  186 (250)
T d2f1na1         140 MRNNDA---------PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL  186 (250)
T ss_dssp             SSSCSH---------HHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS
T ss_pred             CCCHHH---------HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
T ss_conf             995659---------99999999999998764146886687345576871255554


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Cytolethal distending toxin subunit B
species: Escherichia coli [TaxId: 562]