Query gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 231 No_of_seqs 122 out of 2316 Neff 10.3 Searched_HMMs 13730 Date Wed Jun 1 06:01:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780797.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zwxa1 d.151.1.3 (A:41-333) S 99.9 4.9E-25 3.6E-29 149.4 17.6 178 5-193 3-196 (293) 2 d2ddra1 d.151.1.3 (A:7-305) Sp 99.9 1.7E-24 1.3E-28 146.5 18.4 181 4-195 1-198 (299) 3 d2a40b1 d.151.1.1 (B:1-260) De 99.8 4.2E-19 3.1E-23 117.8 14.1 165 7-195 1-177 (260) 4 d1vyba_ d.151.1.1 (A:) Endonuc 99.8 3.3E-18 2.4E-22 113.1 16.9 146 4-191 3-148 (236) 5 d2f1na1 d.151.1.1 (A:1-250) Cy 99.8 8E-20 5.8E-24 121.7 6.1 162 5-198 3-186 (250) 6 d1sr4b_ d.151.1.1 (B:) Cytolet 99.7 1.2E-17 9E-22 110.0 9.7 169 5-195 3-186 (261) 7 d1wdua_ d.151.1.1 (A:) Endonuc 99.7 1.3E-15 9.3E-20 99.3 17.8 140 6-190 2-141 (228) 8 d2imqx1 d.151.1.2 (X:3-282) Sa 99.7 8.9E-17 6.5E-21 105.4 9.8 158 5-192 5-175 (280) 9 d1i9za_ d.151.1.2 (A:) Synapto 99.7 3.7E-15 2.7E-19 96.8 15.1 157 6-192 26-213 (345) 10 d1hd7a_ d.151.1.1 (A:) DNA rep 99.5 4.7E-13 3.4E-17 85.6 14.3 153 5-191 17-172 (275) 11 d1akoa_ d.151.1.1 (A:) DNA-rep 99.3 2.3E-10 1.7E-14 71.3 16.1 154 7-191 1-156 (268) 12 d1f89a_ d.160.1.1 (A:) hypothe 82.4 0.92 6.7E-05 20.2 4.5 44 2-57 5-53 (281) 13 d2qlvb1 b.1.18.21 (B:161-247) 36.9 7.3 0.00053 15.4 1.7 13 178-190 14-26 (87) 14 d1xm7a_ d.159.1.8 (A:) Hypothe 28.7 14 0.00099 13.9 2.0 50 124-188 100-149 (188) 15 d1emsa2 d.160.1.1 (A:10-280) N 23.5 17 0.0012 13.4 6.1 44 2-58 1-47 (271) No 1 >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Probab=99.93 E-value=4.9e-25 Score=149.44 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=110.2 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCC--CCEEEEEECCCC Q ss_conf 548998873100767775566676666879999999999975189899997279988999872623--221677403578 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPND--KWDILYSGSNTD 82 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~--~~~~~~~~~~~~ 82 (231) +.|||+||||.++..... ......++.+.|++.|...+|||||||||.+......+.... .|.+........ T Consensus 3 ~~lki~s~Nv~~~~~~~~------~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 76 (293) T d1zwxa1 3 GNFKITSHNVYLFSRNIY------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRS 76 (293) T ss_dssp CSCEEEEEEEEECCTTTS------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSC T ss_pred CCCEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEHHCCCC T ss_conf 977899884685765558------98278999999999997569988999846774258999987765414000001134 Q ss_pred CC-------------CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCC Q ss_conf 76-------------50356886146410100001221467565544575049999984997899999751168888754 Q gi|254780797|r 83 KH-------------AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSI 149 (231) Q Consensus 83 ~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~ 149 (231) .. ....|+++.++.. .......+............++++.+.+..+|..++|+++||+++...... T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~ilsr~p-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 155 (293) T d1zwxa1 77 KHGWDKTEGNYSNFALEDGGVAVVSQWP-IVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISK 155 (293) T ss_dssp STTCSEEEC-----CCBCCCCEEEESSC-EEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCH T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCH T ss_conf 5432211145443201266269996467-544215652024542001341489999963993479998441036775303 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCC Q ss_conf 3002545788754899999999974-0488789999136888462 Q gi|254780797|r 150 EDSYISSCYMLNLQATWLKQWVDQK-NNLNMPFIIAGDFNRKINH 193 (231) Q Consensus 150 ~~~~~~~~~~~~~q~~~l~~~i~~~-~~~~~~vii~GDFN~~~~~ 193 (231) ......|..|++++.+++.+. ...+.|+|||||||..+.+ T Consensus 156 ----~~~~~~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~ 196 (293) T d1zwxa1 156 ----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 196 (293) T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS T ss_pred ----HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC T ss_conf ----57799999989886545554036889848998066989885 No 2 >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Probab=99.93 E-value=1.7e-24 Score=146.48 Aligned_cols=181 Identities=13% Similarity=0.078 Sum_probs=108.0 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC--CCCEEEEEECCC Q ss_conf 654899887310076777556667666687999999999997518989999727998899987262--322167740357 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPN--DKWDILYSGSNT 81 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~--~~~~~~~~~~~~ 81 (231) .++||||||||.++..... + .....++.+.|++.|...+|||||||||.+......+... ..+.+.+..... T Consensus 1 ~~tl~v~s~Nv~~~~~~~~----~--~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (299) T d2ddra1 1 NDTLKVMTHNVYMLSTNLY----P--NWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGR 74 (299) T ss_dssp CCEEEEEEEEEEECCTTTC----T--TSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTS T ss_pred CCCEEEEEEECCCCCCCCC----C--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC T ss_conf 9966999877884654668----8--727889999999998756998899992677652788888888756740332134 Q ss_pred CCCC--------------CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCC Q ss_conf 8765--------------03568861464101000012214675655445750499999849978999997511688887 Q gi|254780797|r 82 DKHA--------------MHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLD 147 (231) Q Consensus 82 ~~~~--------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~ 147 (231) .... ...|+++..+...... ................+.++.+.+..++..++|+|+||+++.... T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 153 (299) T d2ddra1 75 SSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEK-IQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMC 153 (299) T ss_dssp CCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEE-EEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC---- T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCC-EEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCC T ss_conf 5555554023012343102641699998611131-345531135755434206999998069808999972466787753 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCCC Q ss_conf 543002545788754899999999974-048878999913688846222 Q gi|254780797|r 148 SIEDSYISSCYMLNLQATWLKQWVDQK-NNLNMPFIIAGDFNRKINHSH 195 (231) Q Consensus 148 ~~~~~~~~~~~~~~~q~~~l~~~i~~~-~~~~~~vii~GDFN~~~~~~~ 195 (231) .. ......|..|+..+.+++... ...+.|+|+|||||..+.... T Consensus 154 ~~----~~~~~~r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~ 198 (299) T d2ddra1 154 GK----TSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAE 198 (299) T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTS T ss_pred CH----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH T ss_conf 10----2468899999998765655420256651799723788865144 No 3 >d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Probab=99.81 E-value=4.2e-19 Score=117.83 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=90.9 Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHH----CC--CCCEEEEEE Q ss_conf 899887310076777556667666687999999999997518989999727998--8999872----62--322167740 Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVF----PN--DKWDILYSG 78 (231) Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~----~~--~~~~~~~~~ 78 (231) |||+||||++|+.. ..+....++.|++.|+ +|||||||||.+. ..+..++ .. ..+.+.... T Consensus 1 lrI~s~Ni~~~~~~---------~~~~~~~~~~l~~~i~--~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (260) T d2a40b1 1 LKIAAFNIRTFGET---------KMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE 69 (260) T ss_dssp CEEEEEEEEEESHH---------HHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC T ss_pred CEEEEEECCCCCCC---------CCCCHHHHHHHHHHCC--CCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 98999968834778---------6665999999998747--999899996234774169999986431146750367415 Q ss_pred CC-CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE---CCEEEEEEEEEECCCCCCCCCCCHHH Q ss_conf 35-787650356886146410100001221467565544575049999984---99789999975116888875430025 Q gi|254780797|r 79 SN-TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEV---DGRKIWLLDIHLKSFCFLDSIEDSYI 154 (231) Q Consensus 79 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~g~~~~v~n~HL~s~~~~~~~~~~~~ 154 (231) .. ........+.++..........................+.+..+.+.. ....+.+++.|+.+. T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 138 (260) T d2a40b1 70 PLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS----------- 138 (260) T ss_dssp CBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG----------- T ss_pred CCCCCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC----------- T ss_conf 677775431002541254420111200013555676543332310212110345624799986415543----------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC Q ss_conf 45788754899999999974048878999913688846222 Q gi|254780797|r 155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSH 195 (231) Q Consensus 155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~ 195 (231) ....+..|...+.+++... ..+.|+|+|||||..+.+.. T Consensus 139 -~~~~~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~~ 177 (260) T d2a40b1 139 -DAVAEINSLYDVYLDVQQK-WHLNDVMLMGDFNADCSYVT 177 (260) T ss_dssp -GHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCSTTTSC T ss_pred -HHHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCHH T ss_conf -0368888899999999863-45788797665567865234 No 4 >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Probab=99.80 E-value=3.3e-18 Score=113.06 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=81.4 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232216774035787 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK 83 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231) ..+|||+||||+.+ +...+...+.++|++.+||||||||+.....-........+.+++..... . T Consensus 3 ~~~~kv~s~Nv~g~--------------~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~-~ 67 (236) T d1vyba_ 3 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGK-Q 67 (236) T ss_dssp CCCEEEEEEECSCC--------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCS-S T ss_pred CCCEEEEEEECCCC--------------CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECC-C T ss_conf 89869999992896--------------12455889999998779859999835476232634542254048975101-1 Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548 Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231) Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231) ...+.+++++.+....... ... ........+.+..++..+.++++|++.... .. . T Consensus 68 ~~~g~~i~~k~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-----------~~----~ 122 (236) T d1vyba_ 68 KKAGVAILVSDKTDFKPTK--IKR--------DKEGHYIMVKGSIQQEELTILNIYAPNTGA-----------PR----F 122 (236) T ss_dssp SSCCEEEEECTTCCCEEEE--EEE--------CTTSSEEEEEEEETTEEEEEEEEECCSSSH-----------HH----H T ss_pred CCCCEEEEEECCCCCCCCC--CCC--------CCCCCCEEEEEEECCCCCEEEEECCCCCCC-----------HH----H T ss_conf 2221146760365212356--421--------113431001343136762467741321220-----------78----8 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCC Q ss_conf 9999999997404887899991368884 Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231) Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231) ..++...+. ...+.|+|+|||||... T Consensus 123 ~~~~~~~~~--~~~~~~~Il~GDfN~~~ 148 (236) T d1vyba_ 123 IKQVLSDLQ--RDLDSHTLIMGDFNTPL 148 (236) T ss_dssp HHHHHHHTT--TTCCTTEEEEEECSSCS T ss_pred HHHHHHHHC--CCCCCEEEEEECCCCCC T ss_conf 876655411--34432069963025554 No 5 >d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Probab=99.78 E-value=8e-20 Score=121.67 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=76.9 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH----HHCCCCCEE--EEEE Q ss_conf 5489988731007677755666766668799999999999751898999972799889998----726232216--7740 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR----VFPNDKWDI--LYSG 78 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~----~~~~~~~~~--~~~~ 78 (231) +.|||+||||+++..... ..........++...+|||||||||++...... .....++.+ +... T Consensus 3 ~~~rv~TwNi~~~~~~~~----------~~~~~~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (250) T d2f1na1 3 TDFRVATWNLQGASATTE----------SKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWN 72 (250) T ss_dssp GGCCEEEEEEEECTTSCH----------HHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEE T ss_pred CCCEEEEEECCCCCCCCC----------CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC T ss_conf 788999994797757655----------6555999999986689899999826863343366765443027642002321 Q ss_pred CCCCCC----------------CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECC Q ss_conf 357876----------------5035688614641010000122146756554457504999998499789999975116 Q gi|254780797|r 79 SNTDKH----------------AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKS 142 (231) Q Consensus 79 ~~~~~~----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s 142 (231) ...... ....+++++...... ..........|+++.+.+ ..+.|+|+||++ T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~---------~~~~~~~~~~r~~~~~~~----~~~~v~n~Hl~~ 139 (250) T d2f1na1 73 LSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEV---------FVLSPVRQGGRPLLGIRI----GNDAFFTAHAIA 139 (250) T ss_dssp CCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEE---------EEECCSSTTCCCEEEEEE----TTEEEEEEECCS T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEE---------EECCCCCCCCCCEEEEEE----CEEEEEEEECCC T ss_conf 3445676326787511454465714599988753056---------751787542211036763----208999998189 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC Q ss_conf 88887543002545788754899999999974048878999913688846222222 Q gi|254780797|r 143 FCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGI 198 (231) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~~~~ 198 (231) ....+. ..+..+++.+.+.+.....+..|+|+|||||..+.+..... T Consensus 140 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~~~~ 186 (250) T d2f1na1 140 MRNNDA---------PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL 186 (250) T ss_dssp SSSCSH---------HHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS T ss_pred CCCHHH---------HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH T ss_conf 995659---------99999999999998764146886687345576871255554 No 6 >d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Probab=99.72 E-value=1.2e-17 Score=110.01 Aligned_cols=169 Identities=18% Similarity=0.156 Sum_probs=78.4 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH----HHHCCCC--CEEEEEE Q ss_conf 548998873100767775566676666879999999999975189899997279988999----8726232--2167740 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK----RVFPNDK--WDILYSG 78 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~----~~~~~~~--~~~~~~~ 78 (231) +.|||+||||+++..... ...+...+..++...+|||+|||||....... .+....+ +..+... T Consensus 3 ~~~rv~TwNi~~~~~~~~----------~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (261) T d1sr4b_ 3 SDFKVATWNLQGSSAVNE----------SKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWN 72 (261) T ss_dssp GGSCEEEEECCCCSSSSH----------HHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEE T ss_pred CCCEEEEEECCCCCCCCC----------CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 788899996796878755----------5544899999985579998999856754563267998876507651144311 Q ss_pred CCCCCCCCEEEEEEECCCCE-----EEEEECCCC----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCC Q ss_conf 35787650356886146410-----100001221----467565544575049999984997899999751168888754 Q gi|254780797|r 79 SNTDKHAMHTAIVIRKGAIH-----LLQKSYLPM----DTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSI 149 (231) Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~ 149 (231) ..........++.+...... .......+. ...........|.++.+.+. ...++++|+.+...... T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~- 147 (261) T d1sr4b_ 73 LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIG----TDVFFTVHALATGGSDA- 147 (261) T ss_dssp SSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEEEET----TEEEEEEECCTTTTTTH- T ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEEE----CCCCEEEEEEECCCCCC- T ss_conf 4666677536899504433453012599968875010453688766665227999984----15514799961477512- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC Q ss_conf 3002545788754899999999974048878999913688846222 Q gi|254780797|r 150 EDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSH 195 (231) Q Consensus 150 ~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~ 195 (231) ......+...+..........+.|+|+|||||..+.+.. T Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~ 186 (261) T d1sr4b_ 148 -------VSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE 186 (261) T ss_dssp -------HHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHH T ss_pred -------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH T ss_conf -------799999999999999986356997799633276764088 No 7 >d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Probab=99.70 E-value=1.3e-15 Score=99.28 Aligned_cols=140 Identities=17% Similarity=0.082 Sum_probs=82.3 Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 48998873100767775566676666879999999999975189899997279988999872623221677403578765 Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHA 85 (231) Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231) +|||+|||++. ...+...++..|...+|||+||||+.-... .......++.+++... ..... T Consensus 2 p~rV~~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 63 (228) T d1wdua_ 2 PYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGA-KSMKGFRGVRVFQSTA-QGDGT 63 (228) T ss_dssp CEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCC-CTTCC T ss_pred CEEEEEECCCC----------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCEEEEECCC-CCCCC T ss_conf 87899420399----------------767899999999736997899987874898-8531136237883457-78987 Q ss_pred CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 03568861464101000012214675655445750499999849978999997511688887543002545788754899 Q gi|254780797|r 86 MHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQAT 165 (231) Q Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~ 165 (231) ...+++++.......... ....+..+.+.+..++..+.++++|++.+... ....+ T Consensus 64 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~--------------~~~~~ 118 (228) T d1wdua_ 64 VKAAIAVFDHDLDVIQYP-----------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI--------------ESYLE 118 (228) T ss_dssp CCEEEEECCSSCEEEECT-----------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCS--------------HHHHH T ss_pred CCEEEEEECCCCCEECCC-----------CCCCCCEEEEEEECCCCCEEEEEEEECCCCCC--------------HHHHH T ss_conf 625999981464045046-----------77889979999982880289999981874310--------------68999 Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCC Q ss_conf 9999999740488789999136888 Q gi|254780797|r 166 WLKQWVDQKNNLNMPFIIAGDFNRK 190 (231) Q Consensus 166 ~l~~~i~~~~~~~~~vii~GDFN~~ 190 (231) .+...+.. ....++|||||||.+ T Consensus 119 ~l~~~~~~--~~~~~vIi~GDfN~~ 141 (228) T d1wdua_ 119 QIKRVERK--MGPKRLIFGGDANAK 141 (228) T ss_dssp HHHHHHHT--TCSSSEEEEEECCCC T ss_pred HHHHHHHH--CCCCEEEEECCCCCC T ss_conf 99999874--589539992253557 No 8 >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Probab=99.68 E-value=8.9e-17 Score=105.44 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=82.5 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHH--------HHH---HHHCCCC Q ss_conf 54899887310076777556667666687999999999997518989--9997279988--------999---8726232 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADI--VCLQEIGSYE--------AIK---RVFPNDK 71 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DV--i~LQEv~~~~--------~~~---~~~~~~~ 71 (231) -+|+|+||||+....+ .++..+.+.+...+||| |||||+.... ... ......+ T Consensus 5 ~~v~I~TwNv~~~~~~--------------~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (280) T d2imqx1 5 LSVHTVSWNSGHERAP--------------TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKG 70 (280) T ss_dssp EEEEEEEEEEETCCCC--------------SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTT T ss_pred EEEEEEEECCCCCCCC--------------CCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 5999998888997387--------------28898856244689898999707368561136234899999998724487 Q ss_pred CEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCC Q ss_conf 21677403578765035688614641010000122146756554457504999998499789999975116888875430 Q gi|254780797|r 72 WDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIED 151 (231) Q Consensus 72 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~ 151 (231) |....... . ...|++++.+.......................++++.+++...+..+.++|+||++......... T Consensus 71 y~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~~ 145 (280) T d2imqx1 71 YTKLKNTI---T--ETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTK 145 (280) T ss_dssp EEEEEEEE---C--SSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSS T ss_pred EEEEEEEE---E--ECEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCHHHHHHH T ss_conf 15898610---2--031799997265445540022167504775567758999999999999963456786603678898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC Q ss_conf 02545788754899999999974048878999913688846 Q gi|254780797|r 152 SYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231) Q Consensus 152 ~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231) .. .. ..........+..++|++||||.+.. T Consensus 146 ~~---~~--------~~~~~~~~~~~~~~vi~~GD~N~~~~ 175 (280) T d2imqx1 146 YA---YD--------TRLDYSKKDDPSDFLFWIGDLNVRVE 175 (280) T ss_dssp SS---CC--------GGGCTTSSSSCCSEEEEEEECSCCBC T ss_pred HH---HH--------HHHHHHHHCCCCCEEEEECCCCCCCC T ss_conf 87---77--------76655541267772687224544445 No 9 >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=99.65 E-value=3.7e-15 Score=96.83 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=84.6 Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCE--EEEECCCC--------------HHH---H Q ss_conf 489988731007677755666766668799999999999---7518989--99972799--------------889---9 Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYA---EQLDADI--VCLQEIGS--------------YEA---I 63 (231) Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~~~DV--i~LQEv~~--------------~~~---~ 63 (231) +|.|+||||+...++. .+.+++ ....||| |||||+.. ..+ + T Consensus 26 ~I~v~TWNv~~~~~~~-----------------~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~~~~~~~~~~w~~~~ 88 (345) T d1i9za_ 26 KIFVASYNLNGCSATT-----------------KLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCV 88 (345) T ss_dssp EEEEEEEECTTCCCCS-----------------CCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHH T ss_pred EEEEEEECCCCCCCCC-----------------CHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHH T ss_conf 8999998679963880-----------------56876466788999999997624773632231036742467899999 Q ss_pred HHHHC-----CCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEE Q ss_conf 98726-----2322167740357876503568861464101000012214675655445750499999849978999997 Q gi|254780797|r 64 KRVFP-----NDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDI 138 (231) Q Consensus 64 ~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~ 138 (231) ...+. ..+|..... ....+....++++.................+.....+.++++.+.+...+..++++|+ T Consensus 89 ~~~~~~~~~~~~~Y~~v~~---~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g~~gnKGaV~vr~~i~~t~l~fvn~ 165 (345) T d1i9za_ 89 KRLLNGKCTSGPGYVQLRS---GQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITS 165 (345) T ss_dssp HHHHHHTCCSSCCEEEEEE---EEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEE T ss_pred HHHCCCCCCCCCCEEEEEE---ECCCCCEEEEEECCHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEE T ss_conf 8753501167998489997---3106708999982511155653126789657688536886499999998999999970 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCEEEEEECCCCCC Q ss_conf 5116888875430025457887548999999999----74048878999913688846 Q gi|254780797|r 139 HLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVD----QKNNLNMPFIIAGDFNRKIN 192 (231) Q Consensus 139 HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~----~~~~~~~~vii~GDFN~~~~ 192 (231) ||+++... ...|..+...+.+.+. .......++|++||||-++. T Consensus 166 HL~ag~~~----------~~~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~R~~ 213 (345) T d1i9za_ 166 HLAAGYTN----------YDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRIS 213 (345) T ss_dssp ECCCCSSC----------HHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBS T ss_pred CCCCCCCC----------HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCC T ss_conf 46676630----------6778878999998611355655456752699623231346 No 10 >d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.50 E-value=4.7e-13 Score=85.64 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=70.2 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCCC Q ss_conf 5489988731007677755666766668799999999999751898999972799--88999872623221677403578 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNTD 82 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (231) .+|||+||||+.+ +. ..-+.+.++|+..+||||||||+.. .+....+....+|.+........ T Consensus 17 ~~mki~S~NvnGl--------------r~-~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (275) T d1hd7a_ 17 ATLKICSWNVDGL--------------RA-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSD 81 (275) T ss_dssp CCEEEEEEECSSH--------------HH-HHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-- T ss_pred CCEEEEEEEECCH--------------HH-HHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEECC T ss_conf 7679999982568--------------76-13435899997589989998822058233888787165764356643202 Q ss_pred CCCCE-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 76503-56886146410100001221467565544575049999984997899999751168888754300254578875 Q gi|254780797|r 83 KHAMH-TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLN 161 (231) Q Consensus 83 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~ 161 (231) ..+.. .+++.+..+.......... ....+ ............+....+|...... .... .. T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~- 142 (275) T d1hd7a_ 82 KEGYSGVGLLSRQCPLKVSYGIGDE--------EHDQE-GRVIVAEFDSFVLVTAYVPNAGRGL-------VRLE--YR- 142 (275) T ss_dssp ---CCCEEEEESSCCSEEEESCSCG--------GGSSS-SCEEEEECSSCEEEEEECCCCCGGG-------TTHH--HH- T ss_pred CCCCCCCCEECCCCCEEEEECCCCC--------CCHHH-HHEEEEEECCEEEEEEEEEECCCCC-------CCHH--HH- T ss_conf 3333442012156860366423345--------30223-2112455313043102454046654-------1013--33- Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCC Q ss_conf 489999999997404887899991368884 Q gi|254780797|r 162 LQATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231) Q Consensus 162 ~q~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231) .....+..........+.+++++||||... T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~ 172 (275) T d1hd7a_ 143 QRWDEAFRKFLKGLASRKPLVLCGDLNVAH 172 (275) T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECSCCC T ss_pred HHHCCCCCCCCCCCCCCCCEEEECCCCCCC T ss_conf 331002000010012477537611224572 No 11 >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Probab=99.27 E-value=2.3e-10 Score=71.29 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=75.2 Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC Q ss_conf 899887310076777556667666687999999999997518989999727998--899987262322167740357876 Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH 84 (231) Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231) |||+||||+++ + .+.+.+.++|++.+|||||||||... ......+...+|.+......... T Consensus 1 Mki~S~NvnG~------------r----~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 63 (268) T d1akoa_ 1 MKFVSFNINGL------------R----ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHY- 63 (268) T ss_dssp CEEEEEECSCG------------G----GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEE- T ss_pred CEEEEEEECCH------------H----HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCCC- T ss_conf 98999980799------------9----849989999987799889998565681119988886569625531443443- Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489 Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231) Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231) ..+............ . .......................+.++..+...+........ ........ T Consensus 64 --~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 129 (268) T d1akoa_ 64 --GVALLTKETPIAVRR------G-FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIK-----FPAKAQFY 129 (268) T ss_dssp --EEEEEESSCCSEEEE------S-STTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTH-----HHHHHHHH T ss_pred --CCCCCCCCCCHHCCC------C-CCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHH-----HHHHHHHH T ss_conf --343211235400014------7-400112354321000000136874799831015786310023-----16778899 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCC Q ss_conf 999999997404887899991368884 Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231) Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231) ......+........+..+++++|... T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (268) T d1akoa_ 130 QNLQNYLETELKRDNPVLIMGDMNISP 156 (268) T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCC T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 999999998762388678874011376 No 12 >d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=82.43 E-value=0.92 Score=20.17 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=29.3 Q ss_pred CCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCCEEEEECC Q ss_conf 8665489988731007677755666766668799999999999751-----8989999727 Q gi|254780797|r 2 ILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQL-----DADIVCLQEI 57 (231) Q Consensus 2 ~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~DVi~LQEv 57 (231) +|+++|||+.=.+.- .....+.+++.+.++|++. ++|+|+|.|. T Consensus 5 ~m~~~~kia~~Q~~~------------~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~ 53 (281) T d1f89a_ 5 ILSQKIKVALVQLSG------------SSPDKMANLQRAATFIERAMKEQPDTKLVVLPEC 53 (281) T ss_dssp SBSSCEEEEEEECCC------------CCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTT T ss_pred HHCCCCEEEEEECCC------------CCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 422473399995778------------8889999999999999999834899979986886 No 13 >d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=36.89 E-value=7.3 Score=15.39 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=8.2 Q ss_pred CCCEEEEEECCCC Q ss_conf 8789999136888 Q gi|254780797|r 178 NMPFIIAGDFNRK 190 (231) Q Consensus 178 ~~~vii~GDFN~~ 190 (231) +..|.|+|+||.| T Consensus 14 g~~V~v~GsFn~W 26 (87) T d2qlvb1 14 GSKVYVTGSFTKW 26 (87) T ss_dssp CSCEEEEEGGGTT T ss_pred CEEEEEEEEECCC T ss_conf 9699999886476 No 14 >d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]} Probab=28.67 E-value=14 Score=13.95 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=22.3 Q ss_pred EEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC Q ss_conf 99984997899999751168888754300254578875489999999997404887899991368 Q gi|254780797|r 124 ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFN 188 (231) Q Consensus 124 ~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN 188 (231) ..+..+|+.+ +-+|.+-......... .....+.+|..+ .+..+.|.|=.= T Consensus 100 ~~~~~~g~~i--~l~H~P~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~lhGH~H 149 (188) T d1xm7a_ 100 KIIEHKGKRI--LLSHYPAKDPITERYP----------DRQEMVREIYFK---ENCDLLIHGHVH 149 (188) T ss_dssp EEEEETTEEE--EEESSCSSCSSCCSCH----------HHHHHHHHHHHH---TTCSEEEECCCC T ss_pred HHHHHCCEEE--EEEECCCCCCCCCCCC----------CCHHHHHHHHHH---CCCEEEEEEECC T ss_conf 9854088179--9996787555554545----------413478888874---395499994125 No 15 >d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Probab=23.47 E-value=17 Score=13.40 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=26.9 Q ss_pred CCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCC Q ss_conf 86654899887310076777556667666687999999999997---5189899997279 Q gi|254780797|r 2 ILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAE---QLDADIVCLQEIG 58 (231) Q Consensus 2 ~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~---~~~~DVi~LQEv~ 58 (231) |.|.++||+.-=+.. ....+.+++.+.+.++ ..++|+|+|-|.. T Consensus 1 m~~~~~rVA~~Q~~~-------------~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~ 47 (271) T d1emsa2 1 MATGRHFIAVCQMTS-------------DNDLEKNFQAAKNMIERAGEKKCEMVFLPECF 47 (271) T ss_dssp CCCSEEEEEEECBCC-------------CSCHHHHHHHHHHHHHHHHHTTCSEEEECTTC T ss_pred CCCCCEEEEEEECCC-------------CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 998886999995889-------------88999999999999999997859699988662 Done!