Query         gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 231
No_of_seqs    122 out of 2316
Neff          10.3
Searched_HMMs 13730
Date          Wed Jun  1 06:01:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780797.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1zwxa1 d.151.1.3 (A:41-333) S  99.9 4.9E-25 3.6E-29  149.4  17.6  178    5-193     3-196 (293)
  2 d2ddra1 d.151.1.3 (A:7-305) Sp  99.9 1.7E-24 1.3E-28  146.5  18.4  181    4-195     1-198 (299)
  3 d2a40b1 d.151.1.1 (B:1-260) De  99.8 4.2E-19 3.1E-23  117.8  14.1  165    7-195     1-177 (260)
  4 d1vyba_ d.151.1.1 (A:) Endonuc  99.8 3.3E-18 2.4E-22  113.1  16.9  146    4-191     3-148 (236)
  5 d2f1na1 d.151.1.1 (A:1-250) Cy  99.8   8E-20 5.8E-24  121.7   6.1  162    5-198     3-186 (250)
  6 d1sr4b_ d.151.1.1 (B:) Cytolet  99.7 1.2E-17   9E-22  110.0   9.7  169    5-195     3-186 (261)
  7 d1wdua_ d.151.1.1 (A:) Endonuc  99.7 1.3E-15 9.3E-20   99.3  17.8  140    6-190     2-141 (228)
  8 d2imqx1 d.151.1.2 (X:3-282) Sa  99.7 8.9E-17 6.5E-21  105.4   9.8  158    5-192     5-175 (280)
  9 d1i9za_ d.151.1.2 (A:) Synapto  99.7 3.7E-15 2.7E-19   96.8  15.1  157    6-192    26-213 (345)
 10 d1hd7a_ d.151.1.1 (A:) DNA rep  99.5 4.7E-13 3.4E-17   85.6  14.3  153    5-191    17-172 (275)
 11 d1akoa_ d.151.1.1 (A:) DNA-rep  99.3 2.3E-10 1.7E-14   71.3  16.1  154    7-191     1-156 (268)
 12 d1f89a_ d.160.1.1 (A:) hypothe  82.4    0.92 6.7E-05   20.2   4.5   44    2-57      5-53  (281)
 13 d2qlvb1 b.1.18.21 (B:161-247)   36.9     7.3 0.00053   15.4   1.7   13  178-190    14-26  (87)
 14 d1xm7a_ d.159.1.8 (A:) Hypothe  28.7      14 0.00099   13.9   2.0   50  124-188   100-149 (188)
 15 d1emsa2 d.160.1.1 (A:10-280) N  23.5      17  0.0012   13.4   6.1   44    2-58      1-47  (271)

No 1  
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}
Probab=99.93  E-value=4.9e-25  Score=149.44  Aligned_cols=178  Identities=16%  Similarity=0.112  Sum_probs=110.2

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCC--CCEEEEEECCCC
Q ss_conf             548998873100767775566676666879999999999975189899997279988999872623--221677403578
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPND--KWDILYSGSNTD   82 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~--~~~~~~~~~~~~   82 (231)
                      +.|||+||||.++.....      ......++.+.|++.|...+|||||||||.+......+....  .|.+........
T Consensus         3 ~~lki~s~Nv~~~~~~~~------~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~~~~~~~~~~~~~   76 (293)
T d1zwxa1           3 GNFKITSHNVYLFSRNIY------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRS   76 (293)
T ss_dssp             CSCEEEEEEEEECCTTTS------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSC
T ss_pred             CCCEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEHHCCCC
T ss_conf             977899884685765558------98278999999999997569988999846774258999987765414000001134


Q ss_pred             CC-------------CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCC
Q ss_conf             76-------------50356886146410100001221467565544575049999984997899999751168888754
Q gi|254780797|r   83 KH-------------AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSI  149 (231)
Q Consensus        83 ~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~  149 (231)
                      ..             ....|+++.++.. .......+............++++.+.+..+|..++|+++||+++......
T Consensus        77 ~~~~~~~~~~~~~~~~~~~g~~ilsr~p-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~  155 (293)
T d1zwxa1          77 KHGWDKTEGNYSNFALEDGGVAVVSQWP-IVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISK  155 (293)
T ss_dssp             STTCSEEEC-----CCBCCCCEEEESSC-EEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCH
T ss_conf             5432211145443201266269996467-544215652024542001341489999963993479998441036775303


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCC
Q ss_conf             3002545788754899999999974-0488789999136888462
Q gi|254780797|r  150 EDSYISSCYMLNLQATWLKQWVDQK-NNLNMPFIIAGDFNRKINH  193 (231)
Q Consensus       150 ~~~~~~~~~~~~~q~~~l~~~i~~~-~~~~~~vii~GDFN~~~~~  193 (231)
                          ......|..|++++.+++.+. ...+.|+|||||||..+.+
T Consensus       156 ----~~~~~~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~  196 (293)
T d1zwxa1         156 ----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT  196 (293)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf             ----57799999989886545554036889848998066989885


No 2  
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=99.93  E-value=1.7e-24  Score=146.48  Aligned_cols=181  Identities=13%  Similarity=0.078  Sum_probs=108.0

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf             654899887310076777556667666687999999999997518989999727998899987262--322167740357
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPN--DKWDILYSGSNT   81 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~--~~~~~~~~~~~~   81 (231)
                      .++||||||||.++.....    +  .....++.+.|++.|...+|||||||||.+......+...  ..+.+.+.....
T Consensus         1 ~~tl~v~s~Nv~~~~~~~~----~--~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~   74 (299)
T d2ddra1           1 NDTLKVMTHNVYMLSTNLY----P--NWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGR   74 (299)
T ss_dssp             CCEEEEEEEEEEECCTTTC----T--TSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTS
T ss_pred             CCCEEEEEEECCCCCCCCC----C--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf             9966999877884654668----8--727889999999998756998899992677652788888888756740332134


Q ss_pred             CCCC--------------CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCC
Q ss_conf             8765--------------03568861464101000012214675655445750499999849978999997511688887
Q gi|254780797|r   82 DKHA--------------MHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLD  147 (231)
Q Consensus        82 ~~~~--------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~  147 (231)
                      ....              ...|+++..+...... ................+.++.+.+..++..++|+|+||+++....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~  153 (299)
T d2ddra1          75 SSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEK-IQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMC  153 (299)
T ss_dssp             CCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEE-EEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC----
T ss_pred             CCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCC-EEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCC
T ss_conf             5555554023012343102641699998611131-345531135755434206999998069808999972466787753


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCCC
Q ss_conf             543002545788754899999999974-048878999913688846222
Q gi|254780797|r  148 SIEDSYISSCYMLNLQATWLKQWVDQK-NNLNMPFIIAGDFNRKINHSH  195 (231)
Q Consensus       148 ~~~~~~~~~~~~~~~q~~~l~~~i~~~-~~~~~~vii~GDFN~~~~~~~  195 (231)
                      ..    ......|..|+..+.+++... ...+.|+|+|||||..+....
T Consensus       154 ~~----~~~~~~r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~  198 (299)
T d2ddra1         154 GK----TSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAE  198 (299)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTS
T ss_pred             CH----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH
T ss_conf             10----2468899999998765655420256651799723788865144


No 3  
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.81  E-value=4.2e-19  Score=117.83  Aligned_cols=165  Identities=15%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHH----CC--CCCEEEEEE
Q ss_conf             899887310076777556667666687999999999997518989999727998--8999872----62--322167740
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVF----PN--DKWDILYSG   78 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~----~~--~~~~~~~~~   78 (231)
                      |||+||||++|+..         ..+....++.|++.|+  +|||||||||.+.  ..+..++    ..  ..+.+....
T Consensus         1 lrI~s~Ni~~~~~~---------~~~~~~~~~~l~~~i~--~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   69 (260)
T d2a40b1           1 LKIAAFNIRTFGET---------KMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE   69 (260)
T ss_dssp             CEEEEEEEEEESHH---------HHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred             CEEEEEECCCCCCC---------CCCCHHHHHHHHHHCC--CCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             98999968834778---------6665999999998747--999899996234774169999986431146750367415


Q ss_pred             CC-CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE---CCEEEEEEEEEECCCCCCCCCCCHHH
Q ss_conf             35-787650356886146410100001221467565544575049999984---99789999975116888875430025
Q gi|254780797|r   79 SN-TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEV---DGRKIWLLDIHLKSFCFLDSIEDSYI  154 (231)
Q Consensus        79 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~g~~~~v~n~HL~s~~~~~~~~~~~~  154 (231)
                      .. ........+.++..........................+.+..+.+..   ....+.+++.|+.+.           
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  138 (260)
T d2a40b1          70 PLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS-----------  138 (260)
T ss_dssp             CBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG-----------
T ss_pred             CCCCCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC-----------
T ss_conf             677775431002541254420111200013555676543332310212110345624799986415543-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             45788754899999999974048878999913688846222
Q gi|254780797|r  155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSH  195 (231)
Q Consensus       155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~  195 (231)
                       ....+..|...+.+++... ..+.|+|+|||||..+.+..
T Consensus       139 -~~~~~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~~  177 (260)
T d2a40b1         139 -DAVAEINSLYDVYLDVQQK-WHLNDVMLMGDFNADCSYVT  177 (260)
T ss_dssp             -GHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCSTTTSC
T ss_pred             -HHHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCHH
T ss_conf             -0368888899999999863-45788797665567865234


No 4  
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80  E-value=3.3e-18  Score=113.06  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=81.4

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK   83 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (231)
                      ..+|||+||||+.+              +...+...+.++|++.+||||||||+.....-........+.+++..... .
T Consensus         3 ~~~~kv~s~Nv~g~--------------~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~-~   67 (236)
T d1vyba_           3 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGK-Q   67 (236)
T ss_dssp             CCCEEEEEEECSCC--------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCS-S
T ss_pred             CCCEEEEEEECCCC--------------CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECC-C
T ss_conf             89869999992896--------------12455889999998779859999835476232634542254048975101-1


Q ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r   84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ  163 (231)
Q Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q  163 (231)
                      ...+.+++++.+.......  ...        ........+.+..++..+.++++|++....           ..    .
T Consensus        68 ~~~g~~i~~k~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-----------~~----~  122 (236)
T d1vyba_          68 KKAGVAILVSDKTDFKPTK--IKR--------DKEGHYIMVKGSIQQEELTILNIYAPNTGA-----------PR----F  122 (236)
T ss_dssp             SSCCEEEEECTTCCCEEEE--EEE--------CTTSSEEEEEEEETTEEEEEEEEECCSSSH-----------HH----H
T ss_pred             CCCCEEEEEECCCCCCCCC--CCC--------CCCCCCEEEEEEECCCCCEEEEECCCCCCC-----------HH----H
T ss_conf             2221146760365212356--421--------113431001343136762467741321220-----------78----8


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             9999999997404887899991368884
Q gi|254780797|r  164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      ..++...+.  ...+.|+|+|||||...
T Consensus       123 ~~~~~~~~~--~~~~~~~Il~GDfN~~~  148 (236)
T d1vyba_         123 IKQVLSDLQ--RDLDSHTLIMGDFNTPL  148 (236)
T ss_dssp             HHHHHHHTT--TTCCTTEEEEEECSSCS
T ss_pred             HHHHHHHHC--CCCCCEEEEEECCCCCC
T ss_conf             876655411--34432069963025554


No 5  
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.78  E-value=8e-20  Score=121.67  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH----HHCCCCCEE--EEEE
Q ss_conf             5489988731007677755666766668799999999999751898999972799889998----726232216--7740
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR----VFPNDKWDI--LYSG   78 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~----~~~~~~~~~--~~~~   78 (231)
                      +.|||+||||+++.....          ..........++...+|||||||||++......    .....++.+  +...
T Consensus         3 ~~~rv~TwNi~~~~~~~~----------~~~~~~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (250)
T d2f1na1           3 TDFRVATWNLQGASATTE----------SKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWN   72 (250)
T ss_dssp             GGCCEEEEEEEECTTSCH----------HHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCCC----------CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             788999994797757655----------6555999999986689899999826863343366765443027642002321


Q ss_pred             CCCCCC----------------CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECC
Q ss_conf             357876----------------5035688614641010000122146756554457504999998499789999975116
Q gi|254780797|r   79 SNTDKH----------------AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKS  142 (231)
Q Consensus        79 ~~~~~~----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s  142 (231)
                      ......                ....+++++......         ..........|+++.+.+    ..+.|+|+||++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~---------~~~~~~~~~~r~~~~~~~----~~~~v~n~Hl~~  139 (250)
T d2f1na1          73 LSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEV---------FVLSPVRQGGRPLLGIRI----GNDAFFTAHAIA  139 (250)
T ss_dssp             CCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEE---------EEECCSSTTCCCEEEEEE----TTEEEEEEECCS
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEE---------EECCCCCCCCCCEEEEEE----CEEEEEEEECCC
T ss_conf             3445676326787511454465714599988753056---------751787542211036763----208999998189


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             88887543002545788754899999999974048878999913688846222222
Q gi|254780797|r  143 FCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGI  198 (231)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~~~~  198 (231)
                      ....+.         ..+..+++.+.+.+.....+..|+|+|||||..+.+.....
T Consensus       140 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~~~~  186 (250)
T d2f1na1         140 MRNNDA---------PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL  186 (250)
T ss_dssp             SSSCSH---------HHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS
T ss_pred             CCCHHH---------HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
T ss_conf             995659---------99999999999998764146886687345576871255554


No 6  
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.72  E-value=1.2e-17  Score=110.01  Aligned_cols=169  Identities=18%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH----HHHCCCC--CEEEEEE
Q ss_conf             548998873100767775566676666879999999999975189899997279988999----8726232--2167740
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK----RVFPNDK--WDILYSG   78 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~----~~~~~~~--~~~~~~~   78 (231)
                      +.|||+||||+++.....          ...+...+..++...+|||+|||||.......    .+....+  +..+...
T Consensus         3 ~~~rv~TwNi~~~~~~~~----------~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (261)
T d1sr4b_           3 SDFKVATWNLQGSSAVNE----------SKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWN   72 (261)
T ss_dssp             GGSCEEEEECCCCSSSSH----------HHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCCC----------CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             788899996796878755----------5544899999985579998999856754563267998876507651144311


Q ss_pred             CCCCCCCCEEEEEEECCCCE-----EEEEECCCC----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCC
Q ss_conf             35787650356886146410-----100001221----467565544575049999984997899999751168888754
Q gi|254780797|r   79 SNTDKHAMHTAIVIRKGAIH-----LLQKSYLPM----DTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSI  149 (231)
Q Consensus        79 ~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~  149 (231)
                      ..........++.+......     .......+.    ...........|.++.+.+.    ...++++|+.+...... 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~-  147 (261)
T d1sr4b_          73 LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIG----TDVFFTVHALATGGSDA-  147 (261)
T ss_dssp             SSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEEEET----TEEEEEEECCTTTTTTH-
T ss_pred             CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEEE----CCCCEEEEEEECCCCCC-
T ss_conf             4666677536899504433453012599968875010453688766665227999984----15514799961477512-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             3002545788754899999999974048878999913688846222
Q gi|254780797|r  150 EDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSH  195 (231)
Q Consensus       150 ~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~  195 (231)
                             ......+...+..........+.|+|+|||||..+.+..
T Consensus       148 -------~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~  186 (261)
T d1sr4b_         148 -------VSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE  186 (261)
T ss_dssp             -------HHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf             -------799999999999999986356997799633276764088


No 7  
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=99.70  E-value=1.3e-15  Score=99.28  Aligned_cols=140  Identities=17%  Similarity=0.082  Sum_probs=82.3

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf             48998873100767775566676666879999999999975189899997279988999872623221677403578765
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHA   85 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (231)
                      +|||+|||++.                ...+...++..|...+|||+||||+.-... .......++.+++... .....
T Consensus         2 p~rV~~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~-~~~~~~~~~~~~~~~~-~~~~~   63 (228)
T d1wdua_           2 PYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGA-KSMKGFRGVRVFQSTA-QGDGT   63 (228)
T ss_dssp             CEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCC-CTTCC
T ss_pred             CEEEEEECCCC----------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCEEEEECCC-CCCCC
T ss_conf             87899420399----------------767899999999736997899987874898-8531136237883457-78987


Q ss_pred             CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             03568861464101000012214675655445750499999849978999997511688887543002545788754899
Q gi|254780797|r   86 MHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQAT  165 (231)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~  165 (231)
                      ...+++++..........           ....+..+.+.+..++..+.++++|++.+...              ....+
T Consensus        64 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~--------------~~~~~  118 (228)
T d1wdua_          64 VKAAIAVFDHDLDVIQYP-----------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI--------------ESYLE  118 (228)
T ss_dssp             CCEEEEECCSSCEEEECT-----------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCS--------------HHHHH
T ss_pred             CCEEEEEECCCCCEECCC-----------CCCCCCEEEEEEECCCCCEEEEEEEECCCCCC--------------HHHHH
T ss_conf             625999981464045046-----------77889979999982880289999981874310--------------68999


Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             9999999740488789999136888
Q gi|254780797|r  166 WLKQWVDQKNNLNMPFIIAGDFNRK  190 (231)
Q Consensus       166 ~l~~~i~~~~~~~~~vii~GDFN~~  190 (231)
                      .+...+..  ....++|||||||.+
T Consensus       119 ~l~~~~~~--~~~~~vIi~GDfN~~  141 (228)
T d1wdua_         119 QIKRVERK--MGPKRLIFGGDANAK  141 (228)
T ss_dssp             HHHHHHHT--TCSSSEEEEEECCCC
T ss_pred             HHHHHHHH--CCCCEEEEECCCCCC
T ss_conf             99999874--589539992253557


No 8  
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}
Probab=99.68  E-value=8.9e-17  Score=105.44  Aligned_cols=158  Identities=12%  Similarity=0.107  Sum_probs=82.5

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHH--------HHH---HHHCCCC
Q ss_conf             54899887310076777556667666687999999999997518989--9997279988--------999---8726232
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADI--VCLQEIGSYE--------AIK---RVFPNDK   71 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DV--i~LQEv~~~~--------~~~---~~~~~~~   71 (231)
                      -+|+|+||||+....+              .++..+.+.+...+|||  |||||+....        ...   ......+
T Consensus         5 ~~v~I~TwNv~~~~~~--------------~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (280)
T d2imqx1           5 LSVHTVSWNSGHERAP--------------TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKG   70 (280)
T ss_dssp             EEEEEEEEEEETCCCC--------------SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEEECCCCCCCC--------------CCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             5999998888997387--------------28898856244689898999707368561136234899999998724487


Q ss_pred             CEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCC
Q ss_conf             21677403578765035688614641010000122146756554457504999998499789999975116888875430
Q gi|254780797|r   72 WDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIED  151 (231)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~  151 (231)
                      |.......   .  ...|++++.+.......................++++.+++...+..+.++|+||++.........
T Consensus        71 y~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~~  145 (280)
T d2imqx1          71 YTKLKNTI---T--ETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTK  145 (280)
T ss_dssp             EEEEEEEE---C--SSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSS
T ss_pred             EEEEEEEE---E--ECEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCHHHHHHH
T ss_conf             15898610---2--031799997265445540022167504775567758999999999999963456786603678898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf             02545788754899999999974048878999913688846
Q gi|254780797|r  152 SYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKIN  192 (231)
Q Consensus       152 ~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~  192 (231)
                      ..   ..        ..........+..++|++||||.+..
T Consensus       146 ~~---~~--------~~~~~~~~~~~~~~vi~~GD~N~~~~  175 (280)
T d2imqx1         146 YA---YD--------TRLDYSKKDDPSDFLFWIGDLNVRVE  175 (280)
T ss_dssp             SS---CC--------GGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred             HH---HH--------HHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf             87---77--------76655541267772687224544445


No 9  
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.65  E-value=3.7e-15  Score=96.83  Aligned_cols=157  Identities=22%  Similarity=0.236  Sum_probs=84.6

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCE--EEEECCCC--------------HHH---H
Q ss_conf             489988731007677755666766668799999999999---7518989--99972799--------------889---9
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYA---EQLDADI--VCLQEIGS--------------YEA---I   63 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~~~DV--i~LQEv~~--------------~~~---~   63 (231)
                      +|.|+||||+...++.                 .+.+++   ....|||  |||||+..              ..+   +
T Consensus        26 ~I~v~TWNv~~~~~~~-----------------~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~~~~~~~~~~w~~~~   88 (345)
T d1i9za_          26 KIFVASYNLNGCSATT-----------------KLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCV   88 (345)
T ss_dssp             EEEEEEEECTTCCCCS-----------------CCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCC-----------------CHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf             8999998679963880-----------------56876466788999999997624773632231036742467899999


Q ss_pred             HHHHC-----CCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEE
Q ss_conf             98726-----2322167740357876503568861464101000012214675655445750499999849978999997
Q gi|254780797|r   64 KRVFP-----NDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDI  138 (231)
Q Consensus        64 ~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~  138 (231)
                      ...+.     ..+|.....   ....+....++++.................+.....+.++++.+.+...+..++++|+
T Consensus        89 ~~~~~~~~~~~~~Y~~v~~---~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g~~gnKGaV~vr~~i~~t~l~fvn~  165 (345)
T d1i9za_          89 KRLLNGKCTSGPGYVQLRS---GQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITS  165 (345)
T ss_dssp             HHHHHHTCCSSCCEEEEEE---EEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEE
T ss_pred             HHHCCCCCCCCCCEEEEEE---ECCCCCEEEEEECCHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEE
T ss_conf             8753501167998489997---3106708999982511155653126789657688536886499999998999999970


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCEEEEEECCCCCC
Q ss_conf             5116888875430025457887548999999999----74048878999913688846
Q gi|254780797|r  139 HLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVD----QKNNLNMPFIIAGDFNRKIN  192 (231)
Q Consensus       139 HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~----~~~~~~~~vii~GDFN~~~~  192 (231)
                      ||+++...          ...|..+...+.+.+.    .......++|++||||-++.
T Consensus       166 HL~ag~~~----------~~~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~R~~  213 (345)
T d1i9za_         166 HLAAGYTN----------YDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRIS  213 (345)
T ss_dssp             ECCCCSSC----------HHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBS
T ss_pred             CCCCCCCC----------HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             46676630----------6778878999998611355655456752699623231346


No 10 
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50  E-value=4.7e-13  Score=85.64  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=70.2

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             5489988731007677755666766668799999999999751898999972799--88999872623221677403578
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNTD   82 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~   82 (231)
                      .+|||+||||+.+              +. ..-+.+.++|+..+||||||||+..  .+....+....+|.+........
T Consensus        17 ~~mki~S~NvnGl--------------r~-~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (275)
T d1hd7a_          17 ATLKICSWNVDGL--------------RA-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSD   81 (275)
T ss_dssp             CCEEEEEEECSSH--------------HH-HHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC--
T ss_pred             CCEEEEEEEECCH--------------HH-HHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEECC
T ss_conf             7679999982568--------------76-13435899997589989998822058233888787165764356643202


Q ss_pred             CCCCE-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             76503-56886146410100001221467565544575049999984997899999751168888754300254578875
Q gi|254780797|r   83 KHAMH-TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLN  161 (231)
Q Consensus        83 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~  161 (231)
                      ..+.. .+++.+..+..........        ....+ ............+....+|......       ....  .. 
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~-  142 (275)
T d1hd7a_          82 KEGYSGVGLLSRQCPLKVSYGIGDE--------EHDQE-GRVIVAEFDSFVLVTAYVPNAGRGL-------VRLE--YR-  142 (275)
T ss_dssp             ---CCCEEEEESSCCSEEEESCSCG--------GGSSS-SCEEEEECSSCEEEEEECCCCCGGG-------TTHH--HH-
T ss_pred             CCCCCCCCEECCCCCEEEEECCCCC--------CCHHH-HHEEEEEECCEEEEEEEEEECCCCC-------CCHH--HH-
T ss_conf             3333442012156860366423345--------30223-2112455313043102454046654-------1013--33-


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             489999999997404887899991368884
Q gi|254780797|r  162 LQATWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       162 ~q~~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      .....+..........+.+++++||||...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~  172 (275)
T d1hd7a_         143 QRWDEAFRKFLKGLASRKPLVLCGDLNVAH  172 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECSCCC
T ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             331002000010012477537611224572


No 11 
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.27  E-value=2.3e-10  Score=71.29  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=75.2

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf             899887310076777556667666687999999999997518989999727998--899987262322167740357876
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH   84 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~   84 (231)
                      |||+||||+++            +    .+.+.+.++|++.+|||||||||...  ......+...+|.+......... 
T Consensus         1 Mki~S~NvnG~------------r----~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   63 (268)
T d1akoa_           1 MKFVSFNINGL------------R----ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHY-   63 (268)
T ss_dssp             CEEEEEECSCG------------G----GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEE-
T ss_pred             CEEEEEEECCH------------H----HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCCC-
T ss_conf             98999980799------------9----849989999987799889998565681119988886569625531443443-


Q ss_pred             CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r   85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA  164 (231)
Q Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~  164 (231)
                        ..+............      . .......................+.++..+...+........     ........
T Consensus        64 --~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  129 (268)
T d1akoa_          64 --GVALLTKETPIAVRR------G-FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIK-----FPAKAQFY  129 (268)
T ss_dssp             --EEEEEESSCCSEEEE------S-STTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTH-----HHHHHHHH
T ss_pred             --CCCCCCCCCCHHCCC------C-CCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHH-----HHHHHHHH
T ss_conf             --343211235400014------7-400112354321000000136874799831015786310023-----16778899


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             999999997404887899991368884
Q gi|254780797|r  165 TWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       165 ~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      ......+........+..+++++|...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (268)
T d1akoa_         130 QNLQNYLETELKRDNPVLIMGDMNISP  156 (268)
T ss_dssp             HHHHHHHHHHCCTTSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             999999998762388678874011376


No 12 
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.43  E-value=0.92  Score=20.17  Aligned_cols=44  Identities=25%  Similarity=0.365  Sum_probs=29.3

Q ss_pred             CCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCCEEEEECC
Q ss_conf             8665489988731007677755666766668799999999999751-----8989999727
Q gi|254780797|r    2 ILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQL-----DADIVCLQEI   57 (231)
Q Consensus         2 ~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~DVi~LQEv   57 (231)
                      +|+++|||+.=.+.-            .....+.+++.+.++|++.     ++|+|+|.|.
T Consensus         5 ~m~~~~kia~~Q~~~------------~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~   53 (281)
T d1f89a_           5 ILSQKIKVALVQLSG------------SSPDKMANLQRAATFIERAMKEQPDTKLVVLPEC   53 (281)
T ss_dssp             SBSSCEEEEEEECCC------------CCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTT
T ss_pred             HHCCCCEEEEEECCC------------CCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             422473399995778------------8889999999999999999834899979986886


No 13 
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=36.89  E-value=7.3  Score=15.39  Aligned_cols=13  Identities=15%  Similarity=0.394  Sum_probs=8.2

Q ss_pred             CCCEEEEEECCCC
Q ss_conf             8789999136888
Q gi|254780797|r  178 NMPFIIAGDFNRK  190 (231)
Q Consensus       178 ~~~vii~GDFN~~  190 (231)
                      +..|.|+|+||.|
T Consensus        14 g~~V~v~GsFn~W   26 (87)
T d2qlvb1          14 GSKVYVTGSFTKW   26 (87)
T ss_dssp             CSCEEEEEGGGTT
T ss_pred             CEEEEEEEEECCC
T ss_conf             9699999886476


No 14 
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}
Probab=28.67  E-value=14  Score=13.95  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=22.3

Q ss_pred             EEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             99984997899999751168888754300254578875489999999997404887899991368
Q gi|254780797|r  124 ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFN  188 (231)
Q Consensus       124 ~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN  188 (231)
                      ..+..+|+.+  +-+|.+-.........          .....+.+|..+   .+..+.|.|=.=
T Consensus       100 ~~~~~~g~~i--~l~H~P~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~lhGH~H  149 (188)
T d1xm7a_         100 KIIEHKGKRI--LLSHYPAKDPITERYP----------DRQEMVREIYFK---ENCDLLIHGHVH  149 (188)
T ss_dssp             EEEEETTEEE--EEESSCSSCSSCCSCH----------HHHHHHHHHHHH---TTCSEEEECCCC
T ss_pred             HHHHHCCEEE--EEEECCCCCCCCCCCC----------CCHHHHHHHHHH---CCCEEEEEEECC
T ss_conf             9854088179--9996787555554545----------413478888874---395499994125


No 15 
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=23.47  E-value=17  Score=13.40  Aligned_cols=44  Identities=16%  Similarity=0.176  Sum_probs=26.9

Q ss_pred             CCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCC
Q ss_conf             86654899887310076777556667666687999999999997---5189899997279
Q gi|254780797|r    2 ILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAE---QLDADIVCLQEIG   58 (231)
Q Consensus         2 ~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~---~~~~DVi~LQEv~   58 (231)
                      |.|.++||+.-=+..             ....+.+++.+.+.++   ..++|+|+|-|..
T Consensus         1 m~~~~~rVA~~Q~~~-------------~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~   47 (271)
T d1emsa2           1 MATGRHFIAVCQMTS-------------DNDLEKNFQAAKNMIERAGEKKCEMVFLPECF   47 (271)
T ss_dssp             CCCSEEEEEEECBCC-------------CSCHHHHHHHHHHHHHHHHHTTCSEEEECTTC
T ss_pred             CCCCCEEEEEEECCC-------------CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             998886999995889-------------88999999999999999997859699988662


Done!