BLAST/PSIBLAST alignment of GI: 254780797 and GI: 54309887 at iteration 1
>gi|54309887|ref|YP_130907.1| hypothetical protein PBPRA2733 [Photobacterium profundum SS9] Length = 319
>gi|46914326|emb|CAG21105.1| hypothetical protein PBPRA2733 [Photobacterium profundum SS9] Length = 319
 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 26/215 (12%)

Query: 7   IRIASWNINNLSEKSGVALFKNSVI-REDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65
           + IASWN+  LS  S   + KN    R   DY  L   A QLDADI+  QE+   +AI +
Sbjct: 31  LTIASWNLQWLS--SDPIVIKNPPPQRTHVDYQQLANIATQLDADILAFQEVADRQAISK 88

Query: 66  VFPNDKWDILYSGSNTDKHAMHT------------AIVIRKGAIHLLQKSYLPMDTEGLD 113
           V  ND++  ++  S+  + + H+               IR+G  ++       +D  G  
Sbjct: 89  VLTNDEY--IFEFSHRQRESQHSDKRYAQPWPQFVGFAIREGISYVRNADLQQLDLWGNK 146

Query: 114 SKAGKRRAVEILFEVDGRK-IWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVD 172
           S    R  V+I    DG   + LL +HLKS C+    + +   +C  LN Q   L+QWVD
Sbjct: 147 SL---RYGVDITLLNDGNPALRLLTVHLKSGCYSQQ-QSTKNRACRHLNRQFEVLEQWVD 202

Query: 173 QKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKIN 207
           ++    +PF+I GDFNR++    +   D++WQ+++
Sbjct: 203 RRAAEPLPFMILGDFNRRL----ALHNDKIWQQLD 233