RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] (231 letters) >gnl|CDD|146159 pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12 and Nocturnin. Length = 255 Score = 55.0 bits (132), Expect = 2e-08 Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 44/213 (20%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66 ++I +WN+N LS + LL + + D D++CLQE + Sbjct: 1 LKILTWNVNGLSAAL-----------KLLWARLLLELLKLEDPDVICLQETKLSPE-SLI 48 Query: 67 FPNDKWDILYSGSNTDKHAMH---------TAIVIRKGAIHLLQKSYLPMDTEGLDSKAG 117 S + + AI+ ++ + ++ + Sbjct: 49 LLLLLLLGYVSPLTSSVYTGFGGGGGGKGGVAILSKEPLVEVILGIFSE----------N 98 Query: 118 KRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNL 177 ++ + +G+ +++ HL + + ++ +L K++ Sbjct: 99 EKDFIRRRILANGKSFVVVNTHLPAGGENLDERLAQLAELL------DFLSDLRIPKSD- 151 Query: 178 NMPFIIAGDFNRKINHSHSGIKDELWQKINQDN 210 P I+ GDFN + L + I + Sbjct: 152 --PVILCGDFNAR----PDSWDSALLKSIGKST 178 >gnl|CDD|31052 COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair]. Length = 261 Score = 35.6 bits (82), Expect = 0.013 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 64/221 (28%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66 ++IASWN+N L + ++ L + E+ D++CLQE +A Sbjct: 1 MKIASWNVNGL----------RARLK------KLLDWLEEEQPDVLCLQET---KAQDEQ 41 Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRKG--AIHLLQKSYLPMDTEGLDSKAGKRRAVEI 124 FP + ++ G H + +KG + +L K G E Sbjct: 42 FP--REELEALGY---HHVFNHG---QKGYSGVAILSKKPPDDVRRGFPG--------EE 85 Query: 125 LFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQAT-------------WLKQWV 171 + +GR I + + + Y N + L+ ++ Sbjct: 86 EDDEEGRVIEA------------EFDGFRVINLYFPNGSSIGLEKFDYKLRFLDALRNYL 133 Query: 172 DQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTL 212 ++ P ++ GDFN I + + + +N+ N+ Sbjct: 134 EELLKKGKPVVLCGDFN--IAPEEIDVANPKKRWLNEGNSG 172 >gnl|CDD|37967 KOG2756, KOG2756, KOG2756, Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]. Length = 349 Score = 35.0 bits (80), Expect = 0.016 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 36/208 (17%) Query: 11 SWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVF-PN 69 +WNI+ L N R L Y+ D++ LQE+ I + Sbjct: 104 TWNIDGLD-------LNNLSERMRAVCHYLALYS----PDVIFLQEV-----IPPYYSYL 147 Query: 70 DKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL-FEV 128 K Y + TAI+++K + + + +P + R + I+ V Sbjct: 148 KKRSSNYEIITGHEEGYFTAIMLKKSRVKVKSQEIIPFPNSKM------MRNLLIVEVNV 201 Query: 129 DGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFN 188 G K+ L+ HL+S + +++ ++ N + I GD N Sbjct: 202 SGNKLCLMTSHLESTR------GHAPERMNQFKMVLKKMQEAIESLPNATV--IFGGDTN 253 Query: 189 -RKINHSHSGIKD---ELWQKINQDNTL 212 R + G+ D ++W+ + + Sbjct: 254 LRDREVTRCGLPDNIVDVWEFLGKPKHC 281 >gnl|CDD|33370 COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]. Length = 259 Score = 33.8 bits (77), Expect = 0.037 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 49/204 (24%) Query: 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS- 59 R ++ ++NI G F + + ++ ADIV LQE+ Sbjct: 4 NTQQARFKVLTYNI-----HKGFGAFDRRFDLPR-----IAEVIREVGADIVALQEVDGA 53 Query: 60 -----------YEAIKRVFPNDKWDILYSGSNTDK---HAMHTAIVIRKGAIHLLQKSYL 105 + R+ W +SG+ H ++ + I ++ L Sbjct: 54 FGRHRDGLLDLPHLLGRLGLAPYW---WSGAAFGAVYGEGQHGNAILSRLPIRDVENLAL 110 Query: 106 PMDTEGLDSKAGKRRAVEILFEVD-GRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 P D GL+ R A+ E+ G+ + +++ HL E+S + QA Sbjct: 111 P-DPTGLE----PRGALLAEIELPGGKPLRVINAHL------GLSEESRLR-------QA 152 Query: 165 TWLKQWVDQKNNLNMPFIIAGDFN 188 L LN P ++ GDFN Sbjct: 153 AALLALAGLPA-LN-PTVLMGDFN 174 >gnl|CDD|73358 cd03748, Ntn_PGA, Penicillin G acylase (PGA) is the key enzyme in the industrial production of beta-lactam antibiotics. PGA hydrolyzes the side chain of penicillin G and related beta-lactam antibiotics releasing 6-amino penicillanic acid (6-APA), a building block in the production of semisynthetic penicillins. PGA is widely distributed among microorganisms, including bacteria, yeast and filamentous fungi but it's in vivo role remains unclear.. Length = 488 Score = 29.9 bits (67), Expect = 0.54 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 13/74 (17%) Query: 60 YEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKR 119 EA ++ WDI + S D + + ++ +GL + + Sbjct: 270 LEARDKLTAQQIWDINRTTSYADLNNRYFLPFLQVA-------------AQGLPANDNRV 316 Query: 120 RAVEILFEVDGRKI 133 VE L DG Sbjct: 317 YLVETLEAWDGMNE 330 >gnl|CDD|37549 KOG2338, KOG2338, KOG2338, Transcriptional effector CCR4-related protein [Transcription]. Length = 495 Score = 29.2 bits (65), Expect = 0.91 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 22/153 (14%) Query: 47 LDADIVCLQEI--GSYEA-IKRVFPNDKWDILY-SGSNTDKHAMHTAIVIRKGAIHLLQK 102 D D++CLQE+ Y + + + + + T H + AI+ L+ Sbjct: 161 YDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKTHGV--AILWHSAKFKLVNH 218 Query: 103 SYLPMDTEGLDSKAGKRRAVEILFEVD-----GRKIWLLDIHLKSFCFLDSIEDSYISSC 157 S L G + + E + I + + HL F S D ++ Sbjct: 219 SELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLL---FNPSRSDVRLAQV 275 Query: 158 YML--NLQATWLKQWVDQKNNLNMPFIIAGDFN 188 Y++ L+ + + + P + GDFN Sbjct: 276 YIILAELEKM------SKSSKSHWPIFLCGDFN 302 >gnl|CDD|32041 COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown]. Length = 275 Score = 28.4 bits (63), Expect = 1.7 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 12/92 (13%) Query: 14 INNLSEKSGVAL-FKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKW 72 + L E++G+ + + E + L+K E+L D+V L +G + IKRV+ K Sbjct: 80 LKALKERTGLLINAHVGFVDESD----LEKLKEEL-VDVVSLDFVGDNDVIKRVYKLPKS 134 Query: 73 DILYSGS------NTDKHAMHTAIVIRKGAIH 98 Y S N + H I + G IH Sbjct: 135 VEDYLRSLLLLKENGIRVVPHITIGLDFGKIH 166 >gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]. Length = 531 Score = 26.1 bits (57), Expect = 9.2 Identities = 7/19 (36%), Positives = 10/19 (52%) Query: 119 RRAVEILFEVDGRKIWLLD 137 R A+E V+G + L D Sbjct: 304 RDAIEAQVTVNGVPVRLSD 322 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0746 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,842,659 Number of extensions: 146959 Number of successful extensions: 317 Number of sequences better than 10.0: 1 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 12 Length of query: 231 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 140 Effective length of database: 4,297,318 Effective search space: 601624520 Effective search space used: 601624520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.3 bits)