RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780797|ref|YP_003065210.1| hypothetical protein
CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>gnl|CDD|146159 pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase
family. This large family of proteins includes
magnesium dependent endonucleases and a large number of
phosphatases involved in intracellular signalling. This
family includes: AP endonuclease proteins EC:4.2.99.18,
DNase I proteins EC:3.1.21.1, Synaptojanin an
inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56,
Sphingomyelinase EC:3.1.4.12 and Nocturnin.
Length = 255
Score = 55.0 bits (132), Expect = 2e-08
Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 44/213 (20%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
++I +WN+N LS + LL + + D D++CLQE +
Sbjct: 1 LKILTWNVNGLSAAL-----------KLLWARLLLELLKLEDPDVICLQETKLSPE-SLI 48
Query: 67 FPNDKWDILYSGSNTDKHAMH---------TAIVIRKGAIHLLQKSYLPMDTEGLDSKAG 117
S + + AI+ ++ + ++ +
Sbjct: 49 LLLLLLLGYVSPLTSSVYTGFGGGGGGKGGVAILSKEPLVEVILGIFSE----------N 98
Query: 118 KRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNL 177
++ + +G+ +++ HL + + ++ +L K++
Sbjct: 99 EKDFIRRRILANGKSFVVVNTHLPAGGENLDERLAQLAELL------DFLSDLRIPKSD- 151
Query: 178 NMPFIIAGDFNRKINHSHSGIKDELWQKINQDN 210
P I+ GDFN + L + I +
Sbjct: 152 --PVILCGDFNAR----PDSWDSALLKSIGKST 178
>gnl|CDD|31052 COG0708, XthA, Exonuclease III [DNA replication, recombination, and
repair].
Length = 261
Score = 35.6 bits (82), Expect = 0.013
Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 64/221 (28%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
++IASWN+N L + ++ L + E+ D++CLQE +A
Sbjct: 1 MKIASWNVNGL----------RARLK------KLLDWLEEEQPDVLCLQET---KAQDEQ 41
Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRKG--AIHLLQKSYLPMDTEGLDSKAGKRRAVEI 124
FP + ++ G H + +KG + +L K G E
Sbjct: 42 FP--REELEALGY---HHVFNHG---QKGYSGVAILSKKPPDDVRRGFPG--------EE 85
Query: 125 LFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQAT-------------WLKQWV 171
+ +GR I + + + Y N + L+ ++
Sbjct: 86 EDDEEGRVIEA------------EFDGFRVINLYFPNGSSIGLEKFDYKLRFLDALRNYL 133
Query: 172 DQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTL 212
++ P ++ GDFN I + + + +N+ N+
Sbjct: 134 EELLKKGKPVVLCGDFN--IAPEEIDVANPKKRWLNEGNSG 172
>gnl|CDD|37967 KOG2756, KOG2756, KOG2756, Predicted Mg2+-dependent
phosphodiesterase TTRAP [Signal transduction
mechanisms].
Length = 349
Score = 35.0 bits (80), Expect = 0.016
Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 36/208 (17%)
Query: 11 SWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVF-PN 69
+WNI+ L N R L Y+ D++ LQE+ I +
Sbjct: 104 TWNIDGLD-------LNNLSERMRAVCHYLALYS----PDVIFLQEV-----IPPYYSYL 147
Query: 70 DKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL-FEV 128
K Y + TAI+++K + + + +P + R + I+ V
Sbjct: 148 KKRSSNYEIITGHEEGYFTAIMLKKSRVKVKSQEIIPFPNSKM------MRNLLIVEVNV 201
Query: 129 DGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFN 188
G K+ L+ HL+S + +++ ++ N + I GD N
Sbjct: 202 SGNKLCLMTSHLESTR------GHAPERMNQFKMVLKKMQEAIESLPNATV--IFGGDTN 253
Query: 189 -RKINHSHSGIKD---ELWQKINQDNTL 212
R + G+ D ++W+ + +
Sbjct: 254 LRDREVTRCGLPDNIVDVWEFLGKPKHC 281
>gnl|CDD|33370 COG3568, ElsH, Metal-dependent hydrolase [General function
prediction only].
Length = 259
Score = 33.8 bits (77), Expect = 0.037
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 49/204 (24%)
Query: 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS- 59
R ++ ++NI G F + + ++ ADIV LQE+
Sbjct: 4 NTQQARFKVLTYNI-----HKGFGAFDRRFDLPR-----IAEVIREVGADIVALQEVDGA 53
Query: 60 -----------YEAIKRVFPNDKWDILYSGSNTDK---HAMHTAIVIRKGAIHLLQKSYL 105
+ R+ W +SG+ H ++ + I ++ L
Sbjct: 54 FGRHRDGLLDLPHLLGRLGLAPYW---WSGAAFGAVYGEGQHGNAILSRLPIRDVENLAL 110
Query: 106 PMDTEGLDSKAGKRRAVEILFEVD-GRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164
P D GL+ R A+ E+ G+ + +++ HL E+S + QA
Sbjct: 111 P-DPTGLE----PRGALLAEIELPGGKPLRVINAHL------GLSEESRLR-------QA 152
Query: 165 TWLKQWVDQKNNLNMPFIIAGDFN 188
L LN P ++ GDFN
Sbjct: 153 AALLALAGLPA-LN-PTVLMGDFN 174
>gnl|CDD|73358 cd03748, Ntn_PGA, Penicillin G acylase (PGA) is the key enzyme in
the industrial production of beta-lactam antibiotics.
PGA hydrolyzes the side chain of penicillin G and
related beta-lactam antibiotics releasing 6-amino
penicillanic acid (6-APA), a building block in the
production of semisynthetic penicillins. PGA is widely
distributed among microorganisms, including bacteria,
yeast and filamentous fungi but it's in vivo role
remains unclear..
Length = 488
Score = 29.9 bits (67), Expect = 0.54
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 60 YEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKR 119
EA ++ WDI + S D + + ++ +GL + +
Sbjct: 270 LEARDKLTAQQIWDINRTTSYADLNNRYFLPFLQVA-------------AQGLPANDNRV 316
Query: 120 RAVEILFEVDGRKI 133
VE L DG
Sbjct: 317 YLVETLEAWDGMNE 330
>gnl|CDD|37549 KOG2338, KOG2338, KOG2338, Transcriptional effector CCR4-related
protein [Transcription].
Length = 495
Score = 29.2 bits (65), Expect = 0.91
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 22/153 (14%)
Query: 47 LDADIVCLQEI--GSYEA-IKRVFPNDKWDILY-SGSNTDKHAMHTAIVIRKGAIHLLQK 102
D D++CLQE+ Y + + + + + T H + AI+ L+
Sbjct: 161 YDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKTHGV--AILWHSAKFKLVNH 218
Query: 103 SYLPMDTEGLDSKAGKRRAVEILFEVD-----GRKIWLLDIHLKSFCFLDSIEDSYISSC 157
S L G + + E + I + + HL F S D ++
Sbjct: 219 SELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLL---FNPSRSDVRLAQV 275
Query: 158 YML--NLQATWLKQWVDQKNNLNMPFIIAGDFN 188
Y++ L+ + + + P + GDFN
Sbjct: 276 YIILAELEKM------SKSSKSHWPIFLCGDFN 302
>gnl|CDD|32041 COG1856, COG1856, Uncharacterized homolog of biotin synthetase
[Function unknown].
Length = 275
Score = 28.4 bits (63), Expect = 1.7
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 14 INNLSEKSGVAL-FKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKW 72
+ L E++G+ + + E + L+K E+L D+V L +G + IKRV+ K
Sbjct: 80 LKALKERTGLLINAHVGFVDESD----LEKLKEEL-VDVVSLDFVGDNDVIKRVYKLPKS 134
Query: 73 DILYSGS------NTDKHAMHTAIVIRKGAIH 98
Y S N + H I + G IH
Sbjct: 135 VEDYLRSLLLLKENGIRVVPHITIGLDFGKIH 166
>gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation,
ribosomal structure and biogenesis].
Length = 531
Score = 26.1 bits (57), Expect = 9.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 119 RRAVEILFEVDGRKIWLLD 137
R A+E V+G + L D
Sbjct: 304 RDAIEAQVTVNGVPVRLSD 322
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,842,659
Number of extensions: 146959
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 12
Length of query: 231
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 140
Effective length of database: 4,297,318
Effective search space: 601624520
Effective search space used: 601624520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)