RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780797|ref|YP_003065210.1| hypothetical protein
CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
         (231 letters)



>gnl|CDD|161970 TIGR00633, xth, exodeoxyribonuclease III (xth).  This family is
          based on the phylogenomic analysis of JA Eisen (1999,
          Ph.D. Thesis, Stanford University).
          Length = 255

 Score = 33.0 bits (76), Expect = 0.060
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 15/50 (30%)

Query: 8  RIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57
          +I SWN+N L           + + +      L++       D++CLQE 
Sbjct: 2  KIISWNVNGL----------RARLHKL-FLDWLKEE----QPDVLCLQET 36


>gnl|CDD|161757 TIGR00195, exoDNase_III, exodeoxyribonuclease III.  The model
          brings in reverse transcriptases at scores below 50,
          model also contains eukaryotic apurinic/apyrimidinic
          endonucleases which group in the same family.
          Length = 254

 Score = 28.9 bits (65), Expect = 1.3
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 16/51 (31%)

Query: 7  IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57
          ++I SWN+N L           + + +         + ++   D++CLQE 
Sbjct: 1  MKIISWNVNGL----------RARLHK------GLAWLKENQPDVLCLQET 35


>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
           Provisional.
          Length = 606

 Score = 28.5 bits (64), Expect = 1.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 48  DADIVCLQEIGS 59
            ADI+CLQE+ S
Sbjct: 298 RADILCLQEVQS 309


>gnl|CDD|180068 PRK05421, PRK05421, hypothetical protein; Provisional.
          Length = 263

 Score = 27.2 bits (61), Expect = 3.3
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)

Query: 5  QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQL--DADIVCLQEIGSYEA 62
          +R+R+  WNI           +K          A      + L  DAD+V LQE  +   
Sbjct: 42 ERLRLLVWNI-----------YKQ-------QRAGWLSVLKNLGKDADLVLLQEAQTTPE 83

Query: 63 IKRVFPNDKWDILY 76
          + +    +      
Sbjct: 84 LVQFATANYLAADQ 97


>gnl|CDD|185163 PRK15251, PRK15251, cytolethal distending toxin subunit CdtB;
           Provisional.
          Length = 271

 Score = 27.0 bits (60), Expect = 5.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 175 NNLNMPFIIAGDFNR 189
           N  ++ ++IAGDFNR
Sbjct: 181 NMRHINWMIAGDFNR 195


>gnl|CDD|149470 pfam08416, PTB, Phosphotyrosine-binding domain.  The
           phosphotyrosine-binding domain (PTB, also
           phosphotyrosine-interaction or PI domain) in the protein
           tensin tends to be found at the C-terminus. Tensin is a
           multi-domain protein that binds to actin filaments and
           functions as a focal-adhesion molecule (focal adhesions
           are regions of plasma membrane through which cells
           attach to the extracellular matrix). Human tensin has
           actin-binding sites, an SH2 (pfam00017) domain and a
           region similar to the tumour suppressor PTEN. The PTB
           domain interacts with the cytoplasmic tails of beta
           integrin by binding to an NPXY motif.
          Length = 131

 Score = 26.5 bits (59), Expect = 6.4
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 112 LDSKAGKRRAVEILFEVDGRKIWLLDIHLKSF 143
           LD++ G+  A ++L +V  + I L D   K  
Sbjct: 31  LDAQ-GRVWAQDMLLQVSAQGITLTDNERKEE 61


>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
          Length = 1452

 Score = 26.4 bits (58), Expect = 7.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query: 179 MPFIIAGDFN 188
           +PF+IAGDFN
Sbjct: 196 IPFVIAGDFN 205


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0745    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,776,841
Number of extensions: 236489
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 15
Length of query: 231
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,049,753
Effective search space: 571015173
Effective search space used: 571015173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)