RPSBLAST alignment of GI: 254780797 and protein with PDBid: 2f1n
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Length = 262
Score = 51.7 bits (122), Expect = 1e-07
Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 32/203 (15%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA- 62
R+A+WN+ ++ + + Q + + DI+ +QE GS +
Sbjct: 13 LTDFRVATWNLQGA----------SATTESKWNINVRQLISGENAVDILAVQEAGSPPST 62
Query: 63 ---IKRVFPNDKWDILYSGSNTDK-------HAMHTAIVIRKGAIHLLQKSYLPMDTEGL 112
RV P+ + N + +A+ G ++L S D +
Sbjct: 63 AVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFV 122
Query: 113 DSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVD 172
S + L + H + D+ L + +
Sbjct: 123 LSPVRQGG--RPLLGIRIGNDAFFTAHAIAMRNNDA---------PALVEEVYNFFRDSR 171
Query: 173 QKNNLNMPFIIAGDFNRKINHSH 195
+ + ++I GDFNR+
Sbjct: 172 DPVHQALNWMILGDFNREPADLE 194