RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780797|ref|YP_003065210.1| hypothetical protein
CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 51.6 bits (122), Expect = 5e-08
Identities = 27/208 (12%), Positives = 61/208 (29%), Gaps = 32/208 (15%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
R+A+WN+ ++ + + Q + + DI+ +QE GS +
Sbjct: 5 FRVATWNLQGA----------SATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVD 54
Query: 67 -----------FPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSK 115
W++ + + +A+ G ++L S D
Sbjct: 55 TGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVF--VL 112
Query: 116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN 175
+ R+ L + H + D+ + +
Sbjct: 113 SPVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPALVE---------EVYNFFRDSRDPV 163
Query: 176 NLNMPFIIAGDFNRKINHSHSGIKDELW 203
+ + ++I GDFNR+ + +
Sbjct: 164 HQALNWMILGDFNREPADLEMNLTVPVR 191
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 51.5 bits (121), Expect = 6e-08
Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 23/199 (11%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAI 63
+I S N+ S ++ N + + L+ + + D+V L E A
Sbjct: 2 PGNFKITSHNVYLFSRN----IYPN--WGQMHRADLIAQADYMKNNDVVILNEAFDTSAS 55
Query: 64 KRVFPNDKWD-ILYSGSNTDKHAMHTAIVIRKGAIHLLQ-------------KSYLPMDT 109
R+ N + + L KS
Sbjct: 56 HRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR 115
Query: 110 EGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQ 169
G + + + +G+ ++ H ++ L S + S
Sbjct: 116 GGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSR---AIRAEQMQEIQTF 172
Query: 170 WVDQKNNLNMPFIIAGDFN 188
+ + I GD N
Sbjct: 173 IAKKNIPKDEIIFIGGDLN 191
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 48.5 bits (113), Expect = 4e-07
Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 26/232 (11%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
+++ + N+ LS + L+ + D+V L E+ A R+
Sbjct: 4 LKVMTHNVYMLSTNL------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRL 57
Query: 67 FPN--DKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQ-------------KSYLPMDTEG 111
N ++ + + + + K
Sbjct: 58 LGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGC 117
Query: 112 LDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWV 171
+ V + + R + ++ HL++ + L
Sbjct: 118 GPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLK---EIQDFIK 174
Query: 172 DQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNA 223
++ N +I GD N +N ++ ++ +P H A
Sbjct: 175 NKNIPNNEYVLIGGDMN--VNKINAENNNDSEYASMFKTLNASVPSYTGHTA 224
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 44.8 bits (104), Expect = 6e-06
Identities = 24/196 (12%), Positives = 54/196 (27%), Gaps = 29/196 (14%)
Query: 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY---- 60
++A+WN+ S + + + Q + + ADI+ +QE GS
Sbjct: 3 SDFKVATWNLQGSSAVNE----------SKWNINVRQLLSGEQGADILMVQEAGSLPSSA 52
Query: 61 -------EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLD 113
+ W++ + ++ + + ++L S D +
Sbjct: 53 VRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIV 112
Query: 114 SKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQ 173
+ +H + D++ T
Sbjct: 113 HSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIRN--------IFTTFNSSSSP 164
Query: 174 KNNLNMPFIIAGDFNR 189
+++ GDFNR
Sbjct: 165 PERRVYSWMVVGDFNR 180
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 43.5 bits (101), Expect = 2e-05
Identities = 25/225 (11%), Positives = 48/225 (21%), Gaps = 21/225 (9%)
Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65
+ SWN + + + L E D V +Q G
Sbjct: 6 SVHTVSWNSGHERA------------PTNLEELLGLNSGETPDVIAVAVQGFGFQTD--- 50
Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125
+ S + L + V+
Sbjct: 51 KPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ 110
Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAG 185
+ G I+ K F F S + + + + + F I
Sbjct: 111 KKSGGIVTS-FTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWI-- 167
Query: 186 DFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILK 230
+N ++Q+N + + A K+
Sbjct: 168 ---GDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFD 209
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 40.7 bits (93), Expect = 1e-04
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 18/200 (9%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQL-DADIVCLQEIGSYEAIKR 65
++IA++NI E + ++ L + DIV +QE+
Sbjct: 1 LKIAAFNIRTFGE------------TKMSNATLASYIVRIVRRYDIVLIQEV---RDSHL 45
Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125
V D L H + + + R + P LD+
Sbjct: 46 VAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCG 105
Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVD--QKNNLNMPFII 183
+ R+ ++ S + + S+ + L Q+ ++
Sbjct: 106 NDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVML 165
Query: 184 AGDFNRKINHSHSGIKDELW 203
GDFN ++ S +
Sbjct: 166 MGDFNADCSYVTSSQWSSIR 185
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 37.0 bits (84), Expect = 0.001
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 29/145 (20%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
R+ N+ A L A A I +QE A +
Sbjct: 3 YRVLQANLQRKKL----------------ATAELAIEAATRKAAIALIQEPYVGGA--KS 44
Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILF 126
+ ++ + + AI + + ++Q L V +
Sbjct: 45 MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVIQYPQLTT-----------NNIVVVGI 93
Query: 127 EVDGRKIWLLDIHLKSFCFLDSIED 151
+I L+ + + ++S +
Sbjct: 94 RTRAWEITLVSYYFEPDKPIESYLE 118
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 35.1 bits (79), Expect = 0.005
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
I I + NIN L NS I+ L + + D + C+QE
Sbjct: 6 ITILTLNINGL----------NSAIKRHR----LASWIKSQDPSVCCIQETHLTCRDTHR 51
Query: 67 FPNDKWDILY 76
W +Y
Sbjct: 52 LKIKGWRKIY 61
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 35.1 bits (79), Expect = 0.006
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 15/51 (29%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57
++I SWN++ L + I++ + ++ DI+CLQE
Sbjct: 19 LKICSWNVDGL----------RAWIKK-----KGLDWVKEEAPDILCLQET 54
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 33.2 bits (74), Expect = 0.018
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 16/50 (32%)
Query: 8 RIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57
+ S+NIN L + L+ E+ D++ LQE
Sbjct: 2 KFVSFNINGL----------RARPH------QLEAIVEKHQPDVIGLQET 35
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 31.7 bits (71), Expect = 0.061
Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 38/240 (15%)
Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65
+I +AS+N+N S + L + D +V QEI +
Sbjct: 26 KIFVASYNLNGCS------------ATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQV 73
Query: 66 VFPN--------DKWDILYSGSNTDKHAMHTAIVIRKGAIHLL---------QKSYLPMD 108
+ + L +G T + L+ +
Sbjct: 74 ISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGT 133
Query: 109 T--EGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATW 166
GL +G + AV I F+ + + + HL + +Y + A+
Sbjct: 134 VKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAG------YTNYDERDHDYRTIASG 187
Query: 167 LKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRT 226
L+ + + + GDFN +I+ ++ + + K +
Sbjct: 188 LRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVP-CIAQGKLSYLFEYDQLNKQMLTGKV 246
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 25.5 bits (56), Expect = 4.2
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 6 RIRIASWNI--NNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAI 63
+I ++W + N + S + + K+S++ +DND AL +A D
Sbjct: 23 QIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGR 82
Query: 64 KRVF--PNDKWDILYSG 78
K V+ + ++ G
Sbjct: 83 KGVYDLIGEHGVPVFEG 99
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous
sarcoma virus RSV [TaxId: 11886]}
Length = 147
Score = 25.4 bits (54), Expect = 4.5
Identities = 7/88 (7%), Positives = 22/88 (25%)
Query: 139 HLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGI 198
H + + + + + + + ++ +
Sbjct: 53 HWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLL 112
Query: 199 KDELWQKINQDNTLMRLPHKKNHNAIRT 226
KD++ D + R+P K +
Sbjct: 113 KDKIRVLAEGDGFMKRIPTSKQGELLAK 140
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
(Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
Length = 458
Score = 24.9 bits (54), Expect = 6.7
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 60 YEAIKRVFPNDKWDILYSGSNTDKHAMH 87
Y AI P K + + HAM
Sbjct: 350 YPAIGYNLPQQKASRIRYHESLMTHAML 377
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 881,362
Number of extensions: 40345
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 21
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)