HHsearch alignment for GI: 254780798 and conserved domain: PRK09455
>PRK09455 rseB periplasmic negative regulator of sigmaE; Provisional.
Probab=95.05 E-value=0.22 Score=26.72 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=101.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC-CC--EEEEEECCCCEEEEEEECEEEEEEECCC
Q ss_conf 74034443101799999986126706999999618955999999966-98--6999971664157775120599971333
Q gi|254780798|r 24 FNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR-PS--KFYFKYSSPSSVSLISDGSNIAVYNAKL 100 (204)
Q Consensus 24 ~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk-P~--k~rw~y~~P~~~~iv~~g~~l~~~d~~~ 100 (204)
T Consensus 2 ~~a~~~~sa~~lL~~M~~A~~~-lnY~G~fv~~~~~~i~s~ri~H~~~~~~e~erL~~LdG~~rEviR~~d~v~~~~p~~ 80 (302)
T PRK09455 2 ANASAEPSAGALLQQMNEASQS-LNYELSFISINKQGIESLRYRHARLDNKPLAQLLQLDGPRREVIQRGNEISYFEPGL 80 (302)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCEEEEEEEEECCEEEEEEEEEEECCCEEEEEEEECCCCCEEEEEECCEEEEECCCC
T ss_conf 8887885999999999988874-781599999939925689999996599699998835998417999599999991798
Q ss_pred CCCCCHHHH--HHHHHHHCCHHHHHHHHCC------CCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCC
Q ss_conf 432101111--1123321000121222101------13223572799720466666347999936984299999996799
Q gi|254780798|r 101 DTWSVYPLR--YMAFSVIFSNNQHVIQESI------QRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSR 172 (204)
Q Consensus 101 ~q~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G 172 (204)
T Consensus 81 ~~~~l~~~~~~~~fP~~l~~~~~~l~~~Y~~~~~G~~RVAGr~a~~v~l~PkD~~Rygy~lWiD~etgLlLKs~lld~~g 160 (302)
T PRK09455 81 EPFTLNGDYIVDSLPSLVYADFKRLSKYYDFISVGRTRIADRLCQVIRVVPKDGTRYSYIVWIDEETKLPLRVDLLDRDG 160 (302)
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHCEEEEECCCCEECCCEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 12788556445657422346865774260179878740888577999998588883468999955779788764315799
Q ss_pred CEE-EEEEEEEECCCCCCHHHCCC
Q ss_conf 879-99997432288689655126
Q gi|254780798|r 173 RYS-IIKILKYKENTVLDPKVFEI 195 (204)
Q Consensus 173 ~~t-~i~f~ni~~N~~i~~~~F~f 195 (204)
T Consensus 161 ~vLEQf~f~~l~v~~~~~~~~~~~ 184 (302)
T PRK09455 161 ETLEQFRVISFTVNDDIASLMQGL 184 (302)
T ss_pred CEEEEEEEEEEECCCCHHHHHHHH
T ss_conf 789999999987176403555432