Query gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 112 out of 1275
Neff 8.8
Searched_HMMs 39220
Date Sun May 29 19:47:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780798.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00031 lolA outer-membrane l 100.0 4.7E-39 1.2E-43 239.1 20.4 188 6-203 1-199 (201)
2 COG2834 LolA Outer membrane li 100.0 3.5E-32 8.9E-37 200.4 21.8 170 34-203 27-207 (211)
3 pfam03548 LolA Outer membrane 100.0 1.7E-32 4.4E-37 202.1 17.2 152 44-196 1-164 (164)
4 TIGR00547 lolA outer membrane 99.4 7.4E-13 1.9E-17 91.4 6.8 167 30-199 19-195 (204)
5 pfam09865 DUF2092 Predicted pe 99.4 1.7E-10 4.4E-15 78.1 17.8 168 32-199 2-205 (215)
6 pfam03888 MucB_RseB MucB/RseB 98.3 0.00023 5.9E-09 43.6 16.4 188 6-195 1-199 (314)
7 COG3900 Predicted periplasmic 98.0 0.00043 1.1E-08 42.0 13.0 168 30-199 35-240 (262)
8 COG3026 RseB Negative regulato 96.5 0.055 1.4E-06 30.2 11.9 183 6-190 1-196 (320)
9 PRK09455 rseB periplasmic nega 95.1 0.22 5.7E-06 26.7 16.8 171 24-195 2-184 (302)
10 COG3017 LolB Outer membrane li 94.1 0.34 8.8E-06 25.7 7.4 79 3-81 1-87 (206)
11 COG2854 Ttg2D ABC-type transpo 82.8 1.9 5E-05 21.4 4.0 55 3-57 1-55 (202)
12 PRK11397 dacD D-alanyl-D-alani 78.9 1.7 4.3E-05 21.8 2.5 24 3-26 1-24 (390)
13 TIGR03656 IsdC heme uptake pro 71.1 5.8 0.00015 18.8 3.6 53 48-100 33-87 (217)
14 PRK10797 glutamate and asparta 67.6 8.6 0.00022 17.8 3.9 38 4-41 1-38 (302)
15 PRK01742 tolB translocation pr 64.5 7.9 0.0002 18.0 3.2 19 3-21 1-19 (430)
16 TIGR00868 hCaCC calcium-activa 58.4 11 0.00028 17.2 3.1 68 132-204 779-849 (874)
17 PRK00022 lolB outer membrane l 55.3 14 0.00037 16.5 10.7 61 42-102 42-108 (203)
18 PRK07018 flgA flagellar basal 51.3 17 0.00043 16.1 4.1 42 3-44 2-43 (236)
19 PRK13697 cytochrome c6; Provis 51.1 15 0.00039 16.4 2.8 19 6-24 1-19 (111)
20 PRK13861 type IV secretion sys 50.8 14 0.00036 16.5 2.6 89 5-98 1-115 (293)
21 PRK10802 peptidoglycan-associa 50.2 17 0.00043 16.1 2.9 24 4-27 1-24 (173)
22 COG3450 Predicted enzyme of th 48.2 19 0.00048 15.9 5.7 65 43-111 27-91 (116)
23 PRK12700 flgH flagellar basal 48.0 18 0.00046 16.0 2.8 33 159-191 158-190 (230)
24 PRK13528 outer membrane recept 46.5 20 0.00051 15.7 2.8 26 1-27 1-26 (727)
25 pfam06649 DUF1161 Protein of u 46.2 20 0.00052 15.7 3.4 46 5-54 1-48 (75)
26 pfam11853 DUF3373 Protein of u 44.8 8.1 0.00021 17.9 0.6 13 6-18 1-13 (485)
27 TIGR03042 PS_II_psbQ_bact phot 43.6 22 0.00057 15.4 3.5 48 6-53 1-52 (142)
28 pfam09403 FadA Adhesion protei 41.1 25 0.00063 15.2 2.7 37 6-44 1-37 (126)
29 PRK11067 outer membrane protei 39.3 24 0.00062 15.3 2.3 23 78-101 89-111 (801)
30 PRK11289 ampC beta-lactamase; 38.4 27 0.00069 15.0 3.9 52 4-55 3-59 (387)
31 PRK04792 tolB translocation pr 37.5 25 0.00063 15.2 2.2 18 62-79 101-118 (450)
32 pfam07608 DUF1571 Protein of u 37.4 28 0.00072 14.9 6.1 53 147-199 150-209 (213)
33 PRK10543 superoxide dismutase; 35.5 9.2 0.00023 17.6 -0.3 50 32-81 90-141 (193)
34 pfam05628 Borrelia_P13 Borreli 34.7 13 0.00034 16.7 0.4 37 6-42 1-37 (165)
35 pfam08118 MDM31_MDM32 Yeast mi 33.8 24 0.00061 15.3 1.6 67 2-68 41-108 (503)
36 PRK09967 putative outer membra 32.7 34 0.00086 14.4 2.5 18 5-22 1-18 (160)
37 PHA00019 phage assembly protei 32.3 34 0.00088 14.4 2.8 18 5-22 1-18 (428)
38 TIGR01601 PYST-C1 Plasmodium y 31.8 16 0.00042 16.2 0.5 22 5-27 1-22 (86)
39 pfam06518 DUF1104 Protein of u 30.5 37 0.00094 14.2 3.2 30 6-35 1-30 (142)
40 TIGR03431 PhnD phosphonate ABC 30.4 37 0.00094 14.2 2.1 52 5-56 1-66 (288)
41 PRK10662 beta-lactamase/D-alan 29.1 39 0.00099 14.1 3.4 50 5-55 1-57 (377)
42 PRK11627 hypothetical protein; 29.0 35 0.0009 14.3 1.8 14 5-18 1-14 (192)
43 PRK09558 ushA bifunctional UDP 26.7 12 0.0003 17.0 -1.0 22 6-27 1-22 (551)
44 pfam10504 DUF2452 Protein of u 26.3 44 0.0011 13.8 2.7 18 68-85 89-106 (160)
45 pfam10566 Glyco_hydro_97 Glyco 25.7 45 0.0012 13.7 1.9 18 6-23 1-18 (643)
46 cd01243 PH_MRCK MRCK (myotonic 25.6 45 0.0012 13.7 4.3 38 60-102 2-41 (122)
47 TIGR02516 type_III_yscC type I 24.7 47 0.0012 13.6 1.9 109 31-139 6-118 (508)
48 PRK03002 prsA peptidylprolyl i 24.2 48 0.0012 13.6 2.7 22 5-26 1-22 (285)
49 COG3040 Blc Bacterial lipocali 23.8 49 0.0013 13.5 6.9 68 44-116 52-138 (174)
50 PRK10925 superoxide dismutase; 23.0 17 0.00042 16.2 -0.8 51 28-78 92-143 (206)
51 PTZ00334 trans-sialidase; Prov 22.5 38 0.00098 14.1 1.0 22 5-26 39-60 (780)
52 pfam10172 DDA1 Det1 complexing 21.5 44 0.0011 13.8 1.1 41 51-94 12-55 (66)
53 PRK12696 flgH flagellar basal 20.6 55 0.0014 13.2 1.5 33 159-191 166-198 (238)
54 COG4309 Uncharacterized conser 20.5 58 0.0015 13.1 2.5 26 66-99 52-77 (98)
No 1
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=100.00 E-value=4.7e-39 Score=239.11 Aligned_cols=188 Identities=15% Similarity=0.276 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEE---CC---CEEEEEEEEECCCEEEEEEC
Q ss_conf 8999999999999999997403444310179999998612670699999961---89---55999999966986999971
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQED---AG---YVMKGEFFMARPSKFYFKYS 79 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~---~~---~~~~G~~~~kkP~k~rw~y~ 79 (204)
||+++.++++++++ +++ .+.++..++++++|++++|++|+|+|+. .+ .+++|+|+++|||+|||+|+
T Consensus 1 mk~~~~~~~~~~~l--~~~-----~~~A~~~~~L~~~l~~i~t~sa~F~Q~~~~~~~~~~~~s~G~~~~kkP~~~rwey~ 73 (201)
T PRK00031 1 MKKLLIAALLAAAL--VAS-----SAFADAASQLKARLAKVKSFSADFTQQVTSGSGKVVQEGSGTFWLKRPNLFRWHYT 73 (201)
T ss_pred CCHHHHHHHHHHHH--HHH-----HHCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEEC
T ss_conf 91599999999998--776-----64502899999998506668999999998799965578899999976986899973
Q ss_pred CCCEEEEEEECEEEEEEECCCCCCCCHHHH----HHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEE
Q ss_conf 664157775120599971333432101111----1123321000121222101132235727997204666663479999
Q gi|254780798|r 80 SPSSVSLISDGSNIAVYNAKLDTWSVYPLR----YMAFSVIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTF 155 (204)
Q Consensus 80 ~P~~~~iv~~g~~l~~~d~~~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f 155 (204)
+|+++.||+||+.+|+|||+++|++.+++. .+|+.++.+........+...... ....+.++........+.+.|
T Consensus 74 ~P~~q~iv~dG~~l~~yd~d~~qv~~~~l~~~~~~~p~~~l~~~~~~l~~~f~v~~~~-~~~~L~Pk~~~~~~~~i~i~~ 152 (201)
T PRK00031 74 KPYEQLIVSDGKTVWFYDPDLEQVTIRWLDDATGNTPFVLLTGNKSSLWKQYDVKQKG-DTFVLTPKAKDTNFKQFTIGF 152 (201)
T ss_pred CCCCEEEEECCCEEEEECCCCCEEEEEEHHHCCCCCHHHHHCCCHHHHHHCEEEEECC-CCEEEEECCCCCCEEEEEEEE
T ss_conf 8871399993879999966535335760132135797998708803433111799736-402576617777705999998
Q ss_pred ECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHCCC-CCCCCCCC
Q ss_conf 3698429999999679987999997432288689655126-85313448
Q gi|254780798|r 156 DRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFEI-PYDKIHNI 203 (204)
Q Consensus 156 ~~~~~~l~~~~i~D~~G~~t~i~f~ni~~N~~i~~~~F~f-~~~~~~~~ 203 (204)
+. ..+++|++.|++|+.|+|.|+|++.|.++++++|+| |++++++|
T Consensus 153 ~~--~~l~~i~i~d~~G~~t~i~f~~~~~N~~i~~~~F~f~~P~gvdVi 199 (201)
T PRK00031 153 RN--GTLASMELVDQDGQRTLITFSNIQKNPAIAADKFTFTPPKGVDVD 199 (201)
T ss_pred CC--CEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCEEECCCCCCEEE
T ss_conf 08--948999999799799999998307289989313899697998662
No 2
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.5e-32 Score=200.37 Aligned_cols=170 Identities=18% Similarity=0.313 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEC---CCEEE-EEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHHH-
Q ss_conf 1799999986126706999999618---95599-999996698699997166415777512059997133343210111-
Q gi|254780798|r 34 QSVKKAIEHFLSIQTMQGTFLQEDA---GYVMK-GEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYPL- 108 (204)
Q Consensus 34 ~~~~~i~~~l~~~~t~~a~F~Q~~~---~~~~~-G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~~- 108 (204)
+.+.+++++++++++++|+|.|+.. +.... |+++++|||++||+|+.|.++++|+||+.+|+|||+++|++....
T Consensus 27 ~~~~~l~~~~~~i~~~s~~f~q~~~~g~~~~~~~g~~~~kkP~~~R~~~~~p~~~~ivsdG~~v~iydp~~~q~~~~~~~ 106 (211)
T COG2834 27 EAASQLKERLAKVKSYSASFTQTVESGSGKQTQEGKLWIKRPNLFRWEYESPDEQVIVSDGKTVWIYDPDLEQVTKTWLS 106 (211)
T ss_pred HHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEEEECC
T ss_conf 99999999986304124799999615996189999999977971899973998529999699999986887589999525
Q ss_pred ---HHHHHHHHCCHHHHHHHHCCCCCCCCCC-EEEEECCC--CCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEE
Q ss_conf ---1112332100012122210113223572-79972046--66663479999369842999999967998799999743
Q gi|254780798|r 109 ---RYMAFSVIFSNNQHVIQESIQRVESNNS-FITIFFKD--DFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKY 182 (204)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni 182 (204)
+.+|+..++....+.......+...... .+.....+ ........++++.+++.+++|++.|..|++++++|+|+
T Consensus 107 ~~~~~tp~~~~~~~~~~~~~~~~v~~~g~~~~~~~l~l~pk~~~~~~~~~i~vd~~~~~~~~~~~~d~~g~~~~i~~~~~ 186 (211)
T COG2834 107 EATGNTPLMLLLSNIKDLLNEYNVSLLGTSDVAYVLELTPKANLGNSKQRIIVDKEDGTPLRFELTDADGQTVTITFSNV 186 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEE
T ss_conf 67787727876521155403404653377650699996035567776189999757782899999967997999999961
Q ss_pred ECCCCCCHHHCCCCCCCCCCC
Q ss_conf 228868965512685313448
Q gi|254780798|r 183 KENTVLDPKVFEIPYDKIHNI 203 (204)
Q Consensus 183 ~~N~~i~~~~F~f~~~~~~~~ 203 (204)
+.|+.++|+.|+|++|+-..+
T Consensus 187 ~~n~~l~d~~F~f~~p~~~~v 207 (211)
T COG2834 187 KNNPGLDDSLFKFTPPKGVTV 207 (211)
T ss_pred EECCCCCCCCEEECCCCCCEE
T ss_conf 665898854311259988673
No 3
>pfam03548 LolA Outer membrane lipoprotein carrier protein LolA.
Probab=100.00 E-value=1.7e-32 Score=202.12 Aligned_cols=152 Identities=20% Similarity=0.367 Sum_probs=124.0
Q ss_pred HCCCEEEEEEEEEECC------CEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHHH----HHHHH
Q ss_conf 1267069999996189------5599999996698699997166415777512059997133343210111----11123
Q gi|254780798|r 44 LSIQTMQGTFLQEDAG------YVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYPL----RYMAF 113 (204)
Q Consensus 44 ~~~~t~~a~F~Q~~~~------~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~~----~~~~~ 113 (204)
.+++||+|+|+|+... .+++|+|+++|||+|||+|++|+++.||+||+.+|+|||+++|++..+. ..+|+
T Consensus 1 ~~i~t~~a~F~Q~~~~~~~~~~~~s~G~~~~kkP~~~rw~y~~P~~~~ii~dg~~l~~yd~~~~qv~~~~~~~~~~~~~~ 80 (164)
T pfam03548 1 SKVKTFSADFVQTVTSGEGKVIQEGSGTFYIKRPGLFRWEYDAPDEQLIVSDGKTVWIYDPDLEQVTIYWLKQALSNTPF 80 (164)
T ss_pred CCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEECCHHHHCCCCHH
T ss_conf 97538999999998668886357778999997698899998798702899948799998563458886110300024768
Q ss_pred HHHCCHHHHHHHHCCCCC--CCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCHH
Q ss_conf 321000121222101132--235727997204666663479999369842999999967998799999743228868965
Q gi|254780798|r 114 SVIFSNNQHVIQESIQRV--ESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPK 191 (204)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~~N~~i~~~ 191 (204)
.++++............. .......+.++........+.|.|+.++ .|++|++.|.+|+.|+|.|+|++.|++|+++
T Consensus 81 ~~l~~~~~~~~~~f~i~~~~~~~~~~~l~p~~~~~~~~~i~i~f~~~~-~l~~i~i~d~~g~~t~i~f~~~~~N~~i~~~ 159 (164)
T pfam03548 81 VLLLRDKIKLDGQYNVTEEEGDLDTFTLKPKAKDVGLSQIRIGFDKKG-VLRQFTVVDQDGQRTTITFSNVKTNPTLADD 159 (164)
T ss_pred HHHHCCHHHHHHCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCC-EEEEEEEEECCCCEEEEEEEEEEECCCCCCC
T ss_conf 988568246431327999327872899974588778549999998999-0999999979989999999953628998701
Q ss_pred HCCCC
Q ss_conf 51268
Q gi|254780798|r 192 VFEIP 196 (204)
Q Consensus 192 ~F~f~ 196 (204)
+|+|.
T Consensus 160 ~F~Ft 164 (164)
T pfam03548 160 LFKFT 164 (164)
T ss_pred EEEEC
T ss_conf 44769
No 4
>TIGR00547 lolA outer membrane lipoprotein carrier protein LolA; InterPro: IPR004564 This protein, LolA, is known so far only in the gamma subdivision of the Proteobacteria. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 . Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and the molecular chaperone, LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane. E. coli lipoproteins are anchored to the inner or outer membrane depending on the residue at position 2. Aspartate at this position makes lipoproteins specific to the inner membrane, whereas other residues cause the release of lipoproteins from the inner membrane.; GO: 0015031 protein transport, 0030288 outer membrane-bounded periplasmic space.
Probab=99.40 E-value=7.4e-13 Score=91.42 Aligned_cols=167 Identities=14% Similarity=0.240 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEEEEC---C---CEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCC
Q ss_conf 43101799999986126706999999618---9---55999999966986999971664157775120599971333432
Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQEDA---G---YVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTW 103 (204)
Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~---~---~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~ 103 (204)
..-++....+...+..+..+.+.|+|+.. | ....|.++++||+.++|+...|.+..++++|+.+|.|+|-.+++
T Consensus 19 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~g~g~~~~~~p~~~~~~~~~p~~~~~~~dg~~~w~~~p~~~~~ 98 (204)
T TIGR00547 19 LAWADAASDLKSRLDKVDSLHAEFTQKVTDGSGKNVQEGSGDLWVKRPNLFNWETKTPDETILVSDGKTLWFYDPFVEQA 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCEEEEECCCEEEEECHHHHHH
T ss_conf 44432245677666554332122221001566531003566225425640110026863103320673446323135556
Q ss_pred CCHHHH----HHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEE
Q ss_conf 101111----1123321000121222101132235727997204666663479999369842999999967998799999
Q gi|254780798|r 104 SVYPLR----YMAFSVIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKI 179 (204)
Q Consensus 104 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f 179 (204)
+..-+. ++|.. ++....................++.+.....+.....+.++.+. .++.....+..|++....+
T Consensus 99 ~~~w~~~~~~~~p~~-~~~~~~~~~w~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~g-~~~~~~~~~~d~~~~~~~~ 176 (204)
T TIGR00547 99 TATWLKDATGNTPFV-LLARNDKSDWHQYNVKQNGDDFVLKPKLSNGNLKQFDINVGADG-TLHNFSATEKDGQTNLYVL 176 (204)
T ss_pred HHHHHHHCCCCCCEE-EEECCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEEEECCCCC-CEECCCCCCCCCCCHHEEE
T ss_conf 666654203776358-98517743310121012676046620345564113554116764-1000001123453001000
Q ss_pred EEEECCCCCCHHHCCCCCCC
Q ss_conf 74322886896551268531
Q gi|254780798|r 180 LKYKENTVLDPKVFEIPYDK 199 (204)
Q Consensus 180 ~ni~~N~~i~~~~F~f~~~~ 199 (204)
.++ .|..+++..|.|.+++
T Consensus 177 ~~~-~~~~~~~~~~~~~p~~ 195 (204)
T TIGR00547 177 KNI-TNGALDDALFTFKPPK 195 (204)
T ss_pred CCC-CCCCCHHHHHEECCCC
T ss_conf 001-2210000110005755
No 5
>pfam09865 DUF2092 Predicted periplasmic protein (DUF2092). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.37 E-value=1.7e-10 Score=78.08 Aligned_cols=168 Identities=10% Similarity=0.108 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHCCCEEE--EEEEEE---ECCC----EEEEEEEEECCCEEEEEECCCCE-EEEEEECEEEEEEECCCC
Q ss_conf 1017999999861267069--999996---1895----59999999669869999716641-577751205999713334
Q gi|254780798|r 32 KDQSVKKAIEHFLSIQTMQ--GTFLQE---DAGY----VMKGEFFMARPSKFYFKYSSPSS-VSLISDGSNIAVYNAKLD 101 (204)
Q Consensus 32 ~~~~~~~i~~~l~~~~t~~--a~F~Q~---~~~~----~~~G~~~~kkP~k~rw~y~~P~~-~~iv~~g~~l~~~d~~~~ 101 (204)
+.+.+++...+|++.++|+ ++.++. ..|+ .++|++.++||+|+|++|....+ ..++.||+.+++|++..+
T Consensus 2 A~~iLk~m~~~L~~~k~fs~~~~~t~d~v~~~gqklq~~~~~~v~v~RPdrlrv~~~gd~~~~~~~yDGkt~tl~~~~~n 81 (215)
T pfam09865 2 ADKLLKAMSDYLAAQKQFSFQYDSTYEVVLEDGQKLQFAASGDLTVRRPDRLRVTRRGDGADVELYFDGKTFTLYGPNAN 81 (215)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEEECCCCEEEEEECCCEEEEECCCCC
T ss_conf 78999999999863615899999770103689974577778889995698489999758830589989918999827778
Q ss_pred CCCCHHHHHHH-----------------HHHHCCHHHHHHHHCCCC-----CCCCCCEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 32101111112-----------------332100012122210113-----22357279972046666634799993698
Q gi|254780798|r 102 TWSVYPLRYMA-----------------FSVIFSNNQHVIQESIQR-----VESNNSFITIFFKDDFMGNMISVTFDRLS 159 (204)
Q Consensus 102 q~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~l~f~~~~ 159 (204)
.....+...+. +.++.............+ .....+..--...-.......+||+....
T Consensus 82 ~Ya~~~ap~tid~~~~~l~~~~gi~~P~adll~~d~~~~l~~~v~~~~~vG~~~V~g~~c~HlAfr~~~~DwQiWI~~g~ 161 (215)
T pfam09865 82 VYAQAPAPGTIDALVDRLRDRLGIELPLADLLLSDPYDELKDGVTSAKYVGQGVVGGVECDHLAFRQDDVDWQIWIAQGE 161 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEEECCC
T ss_conf 48956699999999999998638877779960668157676404079996448899998678988158925999970799
Q ss_pred C-EEEEEEEEECCCC---EEEEEEEEEECCCCCCHHHCCCCCCC
Q ss_conf 4-2999999967998---79999974322886896551268531
Q gi|254780798|r 160 Y-RLLNWKIMDSSRR---YSIIKILKYKENTVLDPKVFEIPYDK 199 (204)
Q Consensus 160 ~-~l~~~~i~D~~G~---~t~i~f~ni~~N~~i~~~~F~f~~~~ 199 (204)
. .++++.|+..... +.+..|+|.+.|++++++.|.|++++
T Consensus 162 ~PLPrk~VIT~k~~~~~Pq~~~~~s~W~l~p~~~~~~F~f~pP~ 205 (215)
T pfam09865 162 RPLPRKLVITYKTDPGQPQYSVRISNWNLDPNVPASAFAFKPPA 205 (215)
T ss_pred CCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHEEECCCC
T ss_conf 66405999985688999547999862306999981136785999
No 6
>pfam03888 MucB_RseB MucB/RseB family. Members of this family are regulators of the anti-sigma E protein RseD.
Probab=98.27 E-value=0.00023 Score=43.56 Aligned_cols=188 Identities=9% Similarity=0.031 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCC--EEEEEECCCC
Q ss_conf 8999999999999999997403444310179999998612670699999961895599999996-698--6999971664
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPS--KFYFKYSSPS 82 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~--k~rw~y~~P~ 82 (204)
||++....++...++ .+..+++...+.+.++++.+..+ -.++++.|+....+...+=.+.=. ..| .-|.+.-...
T Consensus 1 ~~~~~~~~~~~~~l~-~~~~a~a~~sa~~~L~~M~~A~~-~lnY~G~fvy~~~~~i~s~ri~H~~~~g~e~erL~~LdG~ 78 (314)
T pfam03888 1 MKKLKSLTLLLGSLL-ASPTAQAEDSAQALLNRMNEASQ-QLSYEGSFVYERNGSFSSLRYRHARQDGKSYAQLLQLDGP 78 (314)
T ss_pred CCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHH-HCCEEEEEEEEECCEEEEEEEEEEECCCEEEEEEEECCCC
T ss_conf 925887999999873-57333466789999999999887-5774799999919902159999995599699999954998
Q ss_pred EEEEEEECEEEEEEECCCCCCCCHHHHHHHHH-HHCCHHHHHHHHCCC--C----CCCCCCEEEEECCCCCCCCEEEEEE
Q ss_conf 15777512059997133343210111111233-210001212221011--3----2235727997204666663479999
Q gi|254780798|r 83 SVSLISDGSNIAVYNAKLDTWSVYPLRYMAFS-VIFSNNQHVIQESIQ--R----VESNNSFITIFFKDDFMGNMISVTF 155 (204)
Q Consensus 83 ~~~iv~~g~~l~~~d~~~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~i~l~f 155 (204)
+..++-.|+.+..+.|+.+..........+.. ++..........+.. . .-..........+.+..-..-.++.
T Consensus 79 ~rEiiR~~d~v~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Y~~~~~G~~RVAGR~a~~v~l~PkD~~RYgy~lWi 158 (314)
T pfam03888 79 QQEVVRRDNLVSYFSPGLEPFTINSGMIADSLPVMNTDFKRLSSYYDFVKVGRSRVAGRAAQVIRVVPKDQFRYGYELHL 158 (314)
T ss_pred HHEEEEECCEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCEEECCCCEECCCEEEEEEEEECCCCCEEEEEEE
T ss_conf 00289969999999179840687466567777656689889853566599897318885569999986888824789999
Q ss_pred ECCCCEEEEEEEEECCCCEE-EEEEEEEECCCCCCHHHCCC
Q ss_conf 36984299999996799879-99997432288689655126
Q gi|254780798|r 156 DRLSYRLLNWKIMDSSRRYS-IIKILKYKENTVLDPKVFEI 195 (204)
Q Consensus 156 ~~~~~~l~~~~i~D~~G~~t-~i~f~ni~~N~~i~~~~F~f 195 (204)
|.++..+.+..+.|..|+.. .+.|+++..+..+++....+
T Consensus 159 D~etgLlLks~lld~~g~vLEqf~ft~l~v~~~~~~~~~~~ 199 (314)
T pfam03888 159 DEETGLPLRSDLLDRDGQLLEQFRVTQLDTGDRLALSEDYL 199 (314)
T ss_pred ECCCCCEEEEHHHCCCCCEEEEEEEEEEEECCCCCHHHHHH
T ss_conf 55789786603336799789999999998267657667641
No 7
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=97.98 E-value=0.00043 Score=42.03 Aligned_cols=168 Identities=10% Similarity=0.084 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEEE-----ECCC----EEEEEEEEECCCEEEEEECCCCE-EEEEEECEEEEEEECC
Q ss_conf 431017999999861267069999996-----1895----59999999669869999716641-5777512059997133
Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQE-----DAGY----VMKGEFFMARPSKFYFKYSSPSS-VSLISDGSNIAVYNAK 99 (204)
Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~-----~~~~----~~~G~~~~kkP~k~rw~y~~P~~-~~iv~~g~~l~~~d~~ 99 (204)
..+...++.+..+++..++||-+.-=+ ..++ .++|.+.+.||+|+|-.|..|+. ..++.||+.+..+-+.
T Consensus 35 ~dad~llkamsdflqaqk~fSv~yd~t~evv~~~gqKlqysasgt~tvsrpdklr~tr~G~~~dte~~fDGktftl~gkn 114 (262)
T COG3900 35 RDADQLLKAMSDFLQAQKTFSVDYDITYEVVTEDGQKLQYSASGTLTVSRPDKLRSTRVGGFRDTEFYFDGKTFTLLGKN 114 (262)
T ss_pred CCHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCCEEEEEECCCEEEECCCCEEEECCCCCEEEEEEECCCEEEEECCC
T ss_conf 13999999999999753316556203300112577666554056488505764255212683656888648378997476
Q ss_pred CCCCCCHHHHHH-----------------HHHHHCCHHHHHHHHCCCCCCC-------CCCEEEEECCCCCCCCEEEEEE
Q ss_conf 343210111111-----------------2332100012122210113223-------5727997204666663479999
Q gi|254780798|r 100 LDTWSVYPLRYM-----------------AFSVIFSNNQHVIQESIQRVES-------NNSFITIFFKDDFMGNMISVTF 155 (204)
Q Consensus 100 ~~q~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~l~f 155 (204)
++-....+...+ -+.++..+..+.......+... +..+..+... ...--.+||+
T Consensus 115 ln~YaqieapgTiD~lvdei~~kyG~~lp~adllsadpyd~L~~gv~ss~~vg~~vVgg~ecd~lafr--~ddvDfqIWI 192 (262)
T COG3900 115 LNFYAQIEAPGTIDELVDEIDDKYGITLPGADLLSADPYDDLIAGVESSKFVGNAVVGGEECDQLAFR--KDDVDFQIWI 192 (262)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCC--CCCCCEEEEE
T ss_conf 55225046998488999987763088765123323684788986510013331100074000234304--8997669986
Q ss_pred E--CCCCEEEEEEEEE--CCCCEEEEEEEEEECCCCCCHHHCCCCCCC
Q ss_conf 3--6984299999996--799879999974322886896551268531
Q gi|254780798|r 156 D--RLSYRLLNWKIMD--SSRRYSIIKILKYKENTVLDPKVFEIPYDK 199 (204)
Q Consensus 156 ~--~~~~~l~~~~i~D--~~G~~t~i~f~ni~~N~~i~~~~F~f~~~~ 199 (204)
. ..|..++.+...- ..+-+-++.|+|.+....++.+-|+|++++
T Consensus 193 sqGeqpvp~k~VITsk~v~g~PqYtv~fsnwksgdev~s~~F~Fkppt 240 (262)
T COG3900 193 SQGEQPVPLKYVITSKDVPGEPQYTVVFSNWKSGDEVPSSDFTFKPPT 240 (262)
T ss_pred ECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEECCCC
T ss_conf 159877531699984246899747999713656898663422654988
No 8
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=96.48 E-value=0.055 Score=30.17 Aligned_cols=183 Identities=10% Similarity=0.043 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEE----EECCCEEEEEECCC
Q ss_conf 89999999999999999974034443101799999986126706999999618955999999----96698699997166
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFF----MARPSKFYFKYSSP 81 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~----~kkP~k~rw~y~~P 81 (204)
||.+...++++.+..+++..|++..+....+.++....++ .+++..|+++......+=... ..+| .-+-.+-..
T Consensus 1 mk~l~~s~~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~-lnYe~sfv~~~~~~m~slryrH~~~D~~~-~aqLl~LDG 78 (320)
T COG3026 1 MKQLWFSLLLLLGSLLLSAAASAESASAAWLQKMNEASQS-LNYELSFVYTRKQGMESLRYRHARLDNKP-LAQLLQLDG 78 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCEEEEEHHCCCH-HHHHHHCCC
T ss_conf 9237899999999986104430468658999999998873-67279999986887640123321115727-888874257
Q ss_pred CEEEEEEECEEEEEEECCCCCCCCHH---HHHHHHHHHCCHHHHHHHH-CCCCC---CCCCCE-EEEECCCCCCCCEEEE
Q ss_conf 41577751205999713334321011---1111233210001212221-01132---235727-9972046666634799
Q gi|254780798|r 82 SSVSLISDGSNIAVYNAKLDTWSVYP---LRYMAFSVIFSNNQHVIQE-SIQRV---ESNNSF-ITIFFKDDFMGNMISV 153 (204)
Q Consensus 82 ~~~~iv~~g~~l~~~d~~~~q~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~-~~~~~~~~~~~~~i~l 153 (204)
.++.+|-.|+.+-...|.++-.+... ....|+..-.+........ +..-+ ..+-.+ ..-..+.+..-..-.+
T Consensus 79 ~~rEvvrr~n~vsyf~pg~~~ft~~~~~i~ds~Pal~~tdf~~Ls~~YDf~~vGr~RVAgr~c~virvvpkD~~RY~Y~v 158 (320)
T COG3026 79 PRREVVRRGNEVSYFEPGLEPFTLNGDYIVDSLPALLNTDFKRLSSYYDFRKVGRTRVAGRLCEVIRVVPKDGFRYSYIV 158 (320)
T ss_pred CCEEEEEECCEEEEECCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHCCCCEEEEEECCCCCCEEEEEE
T ss_conf 41035663888876337754055136430333178873698786432127550655525871048997358885689999
Q ss_pred EEECCCCEEEEEEEEECCCCEE-EEEEEEEECCCCCCH
Q ss_conf 9936984299999996799879-999974322886896
Q gi|254780798|r 154 TFDRLSYRLLNWKIMDSSRRYS-IIKILKYKENTVLDP 190 (204)
Q Consensus 154 ~f~~~~~~l~~~~i~D~~G~~t-~i~f~ni~~N~~i~~ 190 (204)
+.|.++..+.+..+.|..|+.- .+.|.+...+.++..
T Consensus 159 w~D~~s~LplrsdlLdrdG~~LEQfrvi~~~vg~~~~~ 196 (320)
T COG3026 159 WLDEESGLPLRSDLLDRDGELLEQFRVIQFNVGDPLQG 196 (320)
T ss_pred EEECCCCCCHHHHHHCCCCCEEEEEEEEEEEECCCHHH
T ss_conf 97446797013565166530531288999984771289
No 9
>PRK09455 rseB periplasmic negative regulator of sigmaE; Provisional
Probab=95.05 E-value=0.22 Score=26.72 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=101.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC-CC--EEEEEECCCCEEEEEEECEEEEEEECCC
Q ss_conf 74034443101799999986126706999999618955999999966-98--6999971664157775120599971333
Q gi|254780798|r 24 FNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR-PS--KFYFKYSSPSSVSLISDGSNIAVYNAKL 100 (204)
Q Consensus 24 ~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk-P~--k~rw~y~~P~~~~iv~~g~~l~~~d~~~ 100 (204)
+.|.+..++...++++.+..++ .++++.|+....+...+=.+.=.. .| .-|.++-...+..++-.|+.+..+.|+.
T Consensus 2 ~~a~~~~sa~~lL~~M~~A~~~-lnY~G~fv~~~~~~i~s~ri~H~~~~~~e~erL~~LdG~~rEviR~~d~v~~~~p~~ 80 (302)
T PRK09455 2 ANASAEPSAGALLQQMNEASQS-LNYELSFISINKQGIESLRYRHARLDNKPLAQLLQLDGPRREVIQRGNEISYFEPGL 80 (302)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCEEEEEEEEECCEEEEEEEEEEECCCEEEEEEEECCCCCEEEEEECCEEEEECCCC
T ss_conf 8887885999999999988874-781599999939925689999996599699998835998417999599999991798
Q ss_pred CCCCCHHHH--HHHHHHHCCHHHHHHHHCC------CCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCC
Q ss_conf 432101111--1123321000121222101------13223572799720466666347999936984299999996799
Q gi|254780798|r 101 DTWSVYPLR--YMAFSVIFSNNQHVIQESI------QRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSR 172 (204)
Q Consensus 101 ~q~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G 172 (204)
+.+....-. .....++..........+. ...-..........+.+..-..-.+|+|.++..+.+..+.|..|
T Consensus 81 ~~~~l~~~~~~~~fP~~l~~~~~~l~~~Y~~~~~G~~RVAGr~a~~v~l~PkD~~Rygy~lWiD~etgLlLKs~lld~~g 160 (302)
T PRK09455 81 EPFTLNGDYIVDSLPSLVYADFKRLSKYYDFISVGRTRIADRLCQVIRVVPKDGTRYSYIVWIDEETKLPLRVDLLDRDG 160 (302)
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHCEEEEECCCCEECCCEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 12788556445657422346865774260179878740888577999998588883468999955779788764315799
Q ss_pred CEE-EEEEEEEECCCCCCHHHCCC
Q ss_conf 879-99997432288689655126
Q gi|254780798|r 173 RYS-IIKILKYKENTVLDPKVFEI 195 (204)
Q Consensus 173 ~~t-~i~f~ni~~N~~i~~~~F~f 195 (204)
+.. .+.|.++..+..+++.+...
T Consensus 161 ~vLEQf~f~~l~v~~~~~~~~~~~ 184 (302)
T PRK09455 161 ETLEQFRVISFTVNDDIASLMQGL 184 (302)
T ss_pred CEEEEEEEEEEECCCCHHHHHHHH
T ss_conf 789999999987176403555432
No 10
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.06 E-value=0.34 Score=25.67 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-----HHHHHHHHHHCCCEEEEEEEE--EECCCEEEEEE-EEECCCEE
Q ss_conf 47889999999999999999974034443101-----799999986126706999999--61895599999-99669869
Q gi|254780798|r 3 FLLYKSVIGVVILFFYSAIFPFNAAYPITKDQ-----SVKKAIEHFLSIQTMQGTFLQ--EDAGYVMKGEF-FMARPSKF 74 (204)
Q Consensus 3 ~~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~-----~~~~i~~~l~~~~t~~a~F~Q--~~~~~~~~G~~-~~kkP~k~ 74 (204)
|.|||+...+++.++.+++..|++.++...+. .=..-++.++.++++++++.= +...+..+|.| +-++|.+.
T Consensus 1 ~~~~~~~~~~l~~~As~LL~aC~~~~~~~~~~~~~~~~Wq~hq~~l~~i~~yq~~G~~~yis~~q~~s~rF~Wqq~p~~y 80 (206)
T COG3017 1 MPMMKRLLFLLLALASLLLTACTLTASRPPNNSPDSPQWQQHQQQLQEIQSYQARGRLAYISDQQRGSARFFWQQQPDRY 80 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 95277787899999999997565667778777874166777788988646542142379986776536889999758847
Q ss_pred EEEECCC
Q ss_conf 9997166
Q gi|254780798|r 75 YFKYSSP 81 (204)
Q Consensus 75 rw~y~~P 81 (204)
|.....|
T Consensus 81 ~L~Ls~p 87 (206)
T COG3017 81 RLLLSNP 87 (206)
T ss_pred EEEEECC
T ss_conf 9998155
No 11
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.81 E-value=1.9 Score=21.43 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 4788999999999999999997403444310179999998612670699999961
Q gi|254780798|r 3 FLLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQED 57 (204)
Q Consensus 3 ~~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~ 57 (204)
|||+|.++...+++..+.+.+..++.+.+.....+...+.+..+++=++.+.|.+
T Consensus 1 ~~m~k~l~~~~ll~~a~a~~~~~~~~~~~~~~v~~~a~~~ls~lk~~~~~~k~dp 55 (202)
T COG2854 1 MMMKKSLTILALLVIAFASSLAAAAPANPYSLVQEAADKVLSILKNNQAKIKQDP 55 (202)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCH
T ss_conf 9389999999999999998887637566689999999999999855513212598
No 12
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=78.94 E-value=1.7 Score=21.79 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 478899999999999999999740
Q gi|254780798|r 3 FLLYKSVIGVVILFFYSAIFPFNA 26 (204)
Q Consensus 3 ~~~mk~i~~~~i~~~~~~~~~~~a 26 (204)
|+|+|+++..++++++.+..++.+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~ 24 (390)
T PRK11397 1 MLLKRRLIIAASLFVFNLSSAFAA 24 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 943789999999999999998740
No 13
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=71.05 E-value=5.8 Score=18.77 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=33.4
Q ss_pred EEEEEEEE-E-ECCCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCC
Q ss_conf 06999999-6-18955999999966986999971664157775120599971333
Q gi|254780798|r 48 TMQGTFLQ-E-DAGYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKL 100 (204)
Q Consensus 48 t~~a~F~Q-~-~~~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~ 100 (204)
+++-+|.= . ..++.|.=.=|+.+|.++.-.-.+.+-+.=+.+..|+--+..+.
T Consensus 33 tY~I~f~VlKd~tde~Smmn~Y~~kPA~L~VknGk~~V~~Tl~~S~wIt~f~ve~ 87 (217)
T TIGR03656 33 TYTINYTVYKADNDSASMANDYFEKPAKLIVKNGKMTVQITVNHSHWITGFKVEG 87 (217)
T ss_pred EEEEEEEEECCCCCCCCHHHHHCCCCEEEEEECCEEEEEEEECCCEEEEEEEECC
T ss_conf 3676789962799753347753069738999699699999964730054679558
No 14
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=67.60 E-value=8.6 Score=17.80 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 78899999999999999999740344431017999999
Q gi|254780798|r 4 LLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIE 41 (204)
Q Consensus 4 ~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~ 41 (204)
|-||++...++.+.+.+.+..++..+.+.++.+++|.+
T Consensus 1 m~~kk~~~~~l~~~l~~~~~~~~~~~~a~~~tL~~Ik~ 38 (302)
T PRK10797 1 MQLRKLATALLALGLSAGLAQAEDAAPAAGSTLDKIAK 38 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 94589999999999999997456777532271999986
No 15
>PRK01742 tolB translocation protein TolB; Provisional
Probab=64.52 E-value=7.9 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 4788999999999999999
Q gi|254780798|r 3 FLLYKSVIGVVILFFYSAI 21 (204)
Q Consensus 3 ~~~mk~i~~~~i~~~~~~~ 21 (204)
|.|||+++..+++++++++
T Consensus 1 m~m~~~~~~~~~~l~~~~~ 19 (430)
T PRK01742 1 MKLLKRLVSVFAVLFAVIS 19 (430)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9169999999999999987
No 16
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=58.41 E-value=11 Score=17.16 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCCCCCCCEEEE---EEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHCCCCCCCCCCCC
Q ss_conf 2357279972046666634799---993698429999999679987999997432288689655126853134489
Q gi|254780798|r 132 ESNNSFITIFFKDDFMGNMISV---TFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFEIPYDKIHNIN 204 (204)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~l---~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~~N~~i~~~~F~f~~~~~~~~~ 204 (204)
.....+...++-..-+.|+..- .++...+ -+.|.+.|-+.+.=++...-+.=+++.|.||+|.|.+-|
T Consensus 779 D~i~nLtWTAPg~~~D~G~a~rYIIRiS~~~L-----DL~~~F~da~~VNt~~L~PKEA~S~E~F~FKPE~~~~~N 849 (874)
T TIGR00868 779 DKIINLTWTAPGDVLDKGKADRYIIRISKSIL-----DLRDDFDDATLVNTTDLIPKEANSKESFKFKPENIKIEN 849 (874)
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEEEECCCCC-----HHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 55543220178100378730367886045700-----134410642354203477531577353124688840024
No 17
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=55.27 E-value=14 Score=16.51 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHCCCE--EEEEEEEEECCCEEEEEE-EEECCCEEEEEECCCCEEE---EEEECEEEEEEECCCCC
Q ss_conf 8612670--699999961895599999-9966986999971664157---77512059997133343
Q gi|254780798|r 42 HFLSIQT--MQGTFLQEDAGYVMKGEF-FMARPSKFYFKYSSPSSVS---LISDGSNIAVYNAKLDT 102 (204)
Q Consensus 42 ~l~~~~t--~~a~F~Q~~~~~~~~G~~-~~kkP~k~rw~y~~P~~~~---iv~~g~~l~~~d~~~~q 102 (204)
.++.++. ++|.+-=...++..+|.| +-+.|+..+.....|..+. |..+...+.+.+.+.+.
T Consensus 42 ~l~~l~~w~~~Gkiav~~~~~~~sa~f~W~q~~~~~~i~L~~pLG~~~~~i~~~~~~~~L~~~~g~~ 108 (203)
T PRK00022 42 QLQQIQQYQARGRFAYISPQQRVSGRFDWQQQGDRYRLLLTSPLGSTELELTGRPGGATLEDNNGQR 108 (203)
T ss_pred HHHHHHCEEEEEEEEEECCCCEEEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCE
T ss_conf 9973423488468999878854789999997598169999802665499999879979999799988
No 18
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=51.26 E-value=17 Score=16.14 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 478899999999999999999740344431017999999861
Q gi|254780798|r 3 FLLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL 44 (204)
Q Consensus 3 ~~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~ 44 (204)
++.+++.+.++.++++++.....++.....+......++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~a~~fv~ 43 (236)
T PRK07018 2 KLTLKRFLAILALLLSPLSAAAFAATQQSISAIQEAAEQFVE 43 (236)
T ss_pred CEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 144899999999999987666633788999999999999999
No 19
>PRK13697 cytochrome c6; Provisional
Probab=51.10 E-value=15 Score=16.37 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999997
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPF 24 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~ 24 (204)
||+++.++++.+++++++.
T Consensus 1 Mk~l~~~~l~~~~~~~~~~ 19 (111)
T PRK13697 1 MKKILKLVLLTLLLLTFAF 19 (111)
T ss_pred CHHHHHHHHHHHHHHHHHC
T ss_conf 9789999999999999980
No 20
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=50.78 E-value=14 Score=16.54 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHCCCEEEEEEE---EE----ECCCE---------------
Q ss_conf 8899999999999999999740344431017999999-8612670699999---96----18955---------------
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIE-HFLSIQTMQGTFL---QE----DAGYV--------------- 61 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~-~l~~~~t~~a~F~---Q~----~~~~~--------------- 61 (204)
|||+++..++++++.. .++.|.........=.+++. .|+.-+-+.-+-. ++ ..|+.
T Consensus 1 mmk~l~~~~~~~l~~~-~~a~A~~~P~~s~~D~Riq~v~Ynp~~V~~V~~~~G~~T~I~F~~dE~I~~v~~Gd~~~W~v~ 79 (293)
T PRK13861 1 MIKKLFLTLACLLFAA-IGALAEDTPAAGKLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAAL 79 (293)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCCCEEEE
T ss_conf 9089999999999861-266787569888889771798808888899999874699999889987998615882014896
Q ss_pred EEEEEEEECCCEEEEEECCCCEEEEEEE---CEEEEEEEC
Q ss_conf 9999999669869999716641577751---205999713
Q gi|254780798|r 62 MKGEFFMARPSKFYFKYSSPSSVSLISD---GSNIAVYNA 98 (204)
Q Consensus 62 ~~G~~~~kkP~k~rw~y~~P~~~~iv~~---g~~l~~~d~ 98 (204)
-.|...+=||- +...|....++.. ++.-+.++-
T Consensus 80 ~~gN~lfiKP~----~~~~~tn~~v~T~~~~~kr~y~f~l 115 (293)
T PRK13861 80 PRGNYLFFKAS----QVLPPQPVVVLTASDAGMRRYVFSI 115 (293)
T ss_pred CCCCEEEEEEC----CCCCCCCEEEEECCCCCEEEEEEEE
T ss_conf 27877999666----7789984189831678828999999
No 21
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=50.16 E-value=17 Score=16.14 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 788999999999999999997403
Q gi|254780798|r 4 LLYKSVIGVVILFFYSAIFPFNAA 27 (204)
Q Consensus 4 ~~mk~i~~~~i~~~~~~~~~~~a~ 27 (204)
|++++++..+++.+.++++.+|++
T Consensus 1 M~~nk~~K~l~ia~~~l~LaACSS 24 (173)
T PRK10802 1 MQLNKVLKGLMIALPVMAIAACSS 24 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 960789999999999999985579
No 22
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=48.16 E-value=19 Score=15.85 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHCCCEEEEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHHHHHH
Q ss_conf 612670699999961895599999996698699997166415777512059997133343210111111
Q gi|254780798|r 43 FLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYPLRYM 111 (204)
Q Consensus 43 l~~~~t~~a~F~Q~~~~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~~~~~ 111 (204)
+.+.+-.+++.....+|....| ++-.-||++||.|.. ++.-.+..|.-.+. +|..+...+....+
T Consensus 27 ~G~p~~~t~~~~~~~dg~~~~G-iWe~TpG~~r~~y~~-~E~chil~G~v~~T--~d~Ge~v~~~aGD~ 91 (116)
T COG3450 27 LGDPSAATWNLYGAPDGQVETG-IWECTPGKFRVTYDE-DEFCHILEGRVEVT--PDGGEPVEVRAGDS 91 (116)
T ss_pred CCCCCCEEHHEEECCCCCEEEE-EEEECCCCCEEECCC-CEEEEEEEEEEEEE--CCCCEEEEECCCCE
T ss_conf 5892010211040789974571-798668600697345-46899996599997--89982889748989
No 23
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=48.03 E-value=18 Score=15.97 Aligned_cols=33 Identities=6% Similarity=0.070 Sum_probs=19.2
Q ss_pred CCEEEEEEEEECCCCEEEEEEEEEECCCCCCHH
Q ss_conf 842999999967998799999743228868965
Q gi|254780798|r 159 SYRLLNWKIMDSSRRYSIIKILKYKENTVLDPK 191 (204)
Q Consensus 159 ~~~l~~~~i~D~~G~~t~i~f~ni~~N~~i~~~ 191 (204)
.+.+++=+-+--.+..=.|.|+-+..-..|..+
T Consensus 158 NL~I~GeK~v~vN~~~e~Ir~sGiVRP~DI~~~ 190 (230)
T PRK12700 158 NLQIAGEKQIAINRGSEYVRFSGVVDPRSITGS 190 (230)
T ss_pred CEEEEEEEEEEECCCEEEEEEEEEECHHHCCCC
T ss_conf 589999899998898899999999987888999
No 24
>PRK13528 outer membrane receptor FepA; Provisional
Probab=46.49 E-value=20 Score=15.73 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 914788999999999999999997403
Q gi|254780798|r 1 MAFLLYKSVIGVVILFFYSAIFPFNAA 27 (204)
Q Consensus 1 ~~~~~mk~i~~~~i~~~~~~~~~~~a~ 27 (204)
|-|+-||+++...+++. .+..+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~-~l~~~~~a~ 26 (727)
T PRK13528 1 MGMRANKILWLLTVVLA-GLNSQLSAA 26 (727)
T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 98304669999999999-875055565
No 25
>pfam06649 DUF1161 Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=46.19 E-value=20 Score=15.68 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCEEEEEEE
Q ss_conf 8899999999999999999740344431017999999861--2670699999
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL--SIQTMQGTFL 54 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~--~~~t~~a~F~ 54 (204)
|+|.++...++++....+ +++.+=++..++|++.+. ...+|+=+-+
T Consensus 1 Mkk~~l~~~l~lla~~al----AA~~sCE~lk~eI~~KI~~nGV~~ftL~iV 48 (75)
T pfam06649 1 MKRLLLAVALLLLAASAL----AAPKSCEELKAEIEAKIQANGVTSYTLEIV 48 (75)
T ss_pred CCHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 924699999999713453----155888999999999999769986079983
No 26
>pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=44.80 E-value=8.1 Score=17.93 Aligned_cols=13 Identities=8% Similarity=0.237 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999999
Q gi|254780798|r 6 YKSVIGVVILFFY 18 (204)
Q Consensus 6 mk~i~~~~i~~~~ 18 (204)
||+++++++.-++
T Consensus 1 Mkk~~~l~~~aal 13 (485)
T pfam11853 1 MKKLVSLSLVAAL 13 (485)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9114789999999
No 27
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=43.60 E-value=22 Score=15.44 Aligned_cols=48 Identities=4% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 89999999999999999974034443----1017999999861267069999
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPIT----KDQSVKKAIEHFLSIQTMQGTF 53 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~----~~~~~~~i~~~l~~~~t~~a~F 53 (204)
+|++.++++++++.++.+|..-.+.. ..+.+.+|+.|...++...-.+
T Consensus 1 lRsi~s~~L~~~~~fLvsC~gp~a~~p~tysp~~l~~Iq~~~~~i~~~r~R~ 52 (142)
T TIGR03042 1 LRSLASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQIQRQAEGIEAAKDRL 52 (142)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9769999999999999883899888999869999999999998899999867
No 28
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=41.10 E-value=25 Score=15.22 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 899999999999999999740344431017999999861
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL 44 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~ 44 (204)
||+++..++++...+.++ +..+..-...++.|++-|+
T Consensus 1 MkK~ll~~~llls~~s~a--a~~~~~v~s~l~~LeaEyq 37 (126)
T pfam09403 1 MKKILLCSMLILSSLSYA--AEAAQEVMSELKNLEAEYQ 37 (126)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_conf 916999999999999987--4578899999998999999
No 29
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=39.28 E-value=24 Score=15.26 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=13.4
Q ss_pred ECCCCEEEEEEECEEEEEEECCCC
Q ss_conf 716641577751205999713334
Q gi|254780798|r 78 YSSPSSVSLISDGSNIAVYNAKLD 101 (204)
Q Consensus 78 y~~P~~~~iv~~g~~l~~~d~~~~ 101 (204)
-+.|.-..|...|+... .+.+++
T Consensus 89 ~E~P~I~~i~~~Gn~~i-~~~~l~ 111 (801)
T PRK11067 89 KERPTIASITFSGNKAV-KDDMLK 111 (801)
T ss_pred EECCEEEEEEEECCCCC-CHHHHH
T ss_conf 95773899999887437-889999
No 30
>PRK11289 ampC beta-lactamase; Provisional
Probab=38.40 E-value=27 Score=14.97 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHH-H--CCCEEEEEEEE
Q ss_conf 78899999999999999999740344431--01799999986-1--26706999999
Q gi|254780798|r 4 LLYKSVIGVVILFFYSAIFPFNAAYPITK--DQSVKKAIEHF-L--SIQTMQGTFLQ 55 (204)
Q Consensus 4 ~~mk~i~~~~i~~~~~~~~~~~a~~~~~~--~~~~~~i~~~l-~--~~~t~~a~F~Q 55 (204)
+|||.++..+++...+..+++.++++..+ .+.++++.+.+ + .+-+++.--++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~id~~i~~~m~~~~iPG~avaVv~ 59 (387)
T PRK11289 3 LMMKSLLAALLLTASISAFAAPAAAATSQQLKDIVDRAIAPLMEEYDIPGMAVAVTY 59 (387)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 799999999999999986167655699799999999999999985799808999999
No 31
>PRK04792 tolB translocation protein TolB; Provisional
Probab=37.54 E-value=25 Score=15.20 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=9.4
Q ss_pred EEEEEEEECCCEEEEEEC
Q ss_conf 999999966986999971
Q gi|254780798|r 62 MKGEFFMARPSKFYFKYS 79 (204)
Q Consensus 62 ~~G~~~~kkP~k~rw~y~ 79 (204)
..|.+...-.|+++.+|.
T Consensus 101 V~G~v~~~~~g~~~V~f~ 118 (450)
T PRK04792 101 LTGSVTQNAEGKYVVNYQ 118 (450)
T ss_pred EEEEEEECCCCEEEEEEE
T ss_conf 999999889974999999
No 32
>pfam07608 DUF1571 Protein of unknown function (DUF1571). A family of paralogous proteins in Rhodopirellula baltica.
Probab=37.40 E-value=28 Score=14.88 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=40.5
Q ss_pred CCCEEEEEEECCCCEEEEEEEEE------CCCCE-EEEEEEEEECCCCCCHHHCCCCCCC
Q ss_conf 66347999936984299999996------79987-9999974322886896551268531
Q gi|254780798|r 147 MGNMISVTFDRLSYRLLNWKIMD------SSRRY-SIIKILKYKENTVLDPKVFEIPYDK 199 (204)
Q Consensus 147 ~~~~i~l~f~~~~~~l~~~~i~D------~~G~~-t~i~f~ni~~N~~i~~~~F~f~~~~ 199 (204)
......+.+|.+.....+++-.| ..|.. =.++|.+++.|..++++-|.-+.+.
T Consensus 150 ~f~~~~v~iD~e~~lPir~e~ydWP~~~~~~g~L~E~y~y~~i~~n~gl~dadFDp~Np~ 209 (213)
T pfam07608 150 NFHKAIVYIDDELCLPIRVRGFGWPSEEGDEPELIESYSYTDLKLNVGLADADFDPTNSD 209 (213)
T ss_pred CEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 414258885025688358862368766688875689999986101578631233888857
No 33
>PRK10543 superoxide dismutase; Provisional
Probab=35.52 E-value=9.2 Score=17.63 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC--CCEEEEEECCC
Q ss_conf 101799999986126706999999618955999999966--98699997166
Q gi|254780798|r 32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR--PSKFYFKYSSP 81 (204)
Q Consensus 32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk--P~k~rw~y~~P 81 (204)
.....+.|++.+.|.+.|..+|...-.+...+|-.++-. -|+++...+.-
T Consensus 90 ~g~L~~aI~~~FGS~e~fk~~f~~~a~~~fGSGW~wLv~~~~g~L~i~~t~n 141 (193)
T PRK10543 90 TGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNADGKLAIVSTSN 141 (193)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCC
T ss_conf 8899999998838999999999999845788758999998999888883357
No 34
>pfam05628 Borrelia_P13 Borrelia membrane protein P13. This family consists of P13 proteins from Borrelia species. P13 is a 13kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism.
Probab=34.74 E-value=13 Score=16.74 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 8999999999999999997403444310179999998
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEH 42 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~ 42 (204)
||+++.+++.+++.+-..++..........++++.+|
T Consensus 1 MkKi~~liLif~lt~qiFAq~d~~~~~~~~ie~~l~Y 37 (165)
T pfam05628 1 MKKIFTLILIFSLTMQIFAQEDKLEKIVGDIETFLKY 37 (165)
T ss_pred CCEEEEHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHH
T ss_conf 9626620566755754120003332111349999887
No 35
>pfam08118 MDM31_MDM32 Yeast mitochondrial distribution and morphology (MDM) proteins. Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA.
Probab=33.76 E-value=24 Score=15.29 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEE
Q ss_conf 1478899999999999-999999740344431017999999861267069999996189559999999
Q gi|254780798|r 2 AFLLYKSVIGVVILFF-YSAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFM 68 (204)
Q Consensus 2 ~~~~mk~i~~~~i~~~-~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~ 68 (204)
||++|=+++.+++--. ++.+....+.+..+++.....+-+++..-.+++..|+--.-++=..|.+.|
T Consensus 41 SW~l~g~ilwIilGTTTF~Slii~~iNTvfaqE~la~~vg~~ltk~sg~~vvFesAiVP~W~~g~I~F 108 (503)
T pfam08118 41 SWLLVSNVLLFFLATTTFVSLVIYLMNTVFAQEYVARKVGNFLTKNSALTVVFESAIVPDWSSGKISF 108 (503)
T ss_pred HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEE
T ss_conf 99996430699882718999999998788899999998765301367857998304567766665999
No 36
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=32.67 E-value=34 Score=14.44 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999999
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIF 22 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~ 22 (204)
|||+.+..+++.++++.-
T Consensus 1 m~k~~~~~~l~~~l~lsg 18 (160)
T PRK09967 1 MIKHLVAPLIFTSLILTG 18 (160)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 907899999999999984
No 37
>PHA00019 phage assembly protein
Probab=32.29 E-value=34 Score=14.40 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999999
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIF 22 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~ 22 (204)
|||++|..+++|++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (428)
T PHA00019 1 MIKSIFAKMLLFLLMFLS 18 (428)
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 927489999999987740
No 38
>TIGR01601 PYST-C1 Plasmodium yoelii subtelomeric domain PYST-C1; InterPro: IPR006488 This group of sequences are defined by the N-terminal domain of a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism. The C-terminal portions of the genes that contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (IPR006491 from INTERPRO). .
Probab=31.81 E-value=16 Score=16.23 Aligned_cols=22 Identities=5% Similarity=0.211 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88999999999999999997403
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNAA 27 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a~ 27 (204)
|-|+|| .|++++|..++..+..
T Consensus 1 MNKrIF-SLVcIvLY~llaVsIH 22 (86)
T TIGR01601 1 MNKRIF-SLVCIVLYILLAVSIH 22 (86)
T ss_pred CCCEEH-HHHHHHHHHHHCCCCC
T ss_conf 984204-6889999998717521
No 39
>pfam06518 DUF1104 Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.
Probab=30.46 E-value=37 Score=14.22 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 899999999999999999740344431017
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQS 35 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~ 35 (204)
||+++.+++...+.+.++..+..+...++.
T Consensus 1 MKk~~~~~l~~aL~~s~l~AaDFSk~snee 30 (142)
T pfam06518 1 MKKALSLCLVGALLFSFLNAADFSSKSNEE 30 (142)
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHCCHHH
T ss_conf 926899999999999985526421026799
No 40
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=30.39 E-value=37 Score=14.21 Aligned_cols=52 Identities=6% Similarity=-0.065 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCHHHH---HHHHHHHCCCEEEEEEEEE
Q ss_conf 88999999999999999997403444-----------3101799---9999861267069999996
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNAAYPI-----------TKDQSVK---KAIEHFLSIQTMQGTFLQE 56 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a~~~~-----------~~~~~~~---~i~~~l~~~~t~~a~F~Q~ 56 (204)
|||+++..++++++++..++.|.... ...+..+ -+.+||..--+..-++...
T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~~~ 66 (288)
T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLFFA 66 (288)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 908899999999999743224304883689998069999999999999999999987897899968
No 41
>PRK10662 beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=29.14 E-value=39 Score=14.09 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHH---HCCCEEEEEEEE
Q ss_conf 8899999999999999999740344431----01799999986---126706999999
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNAAYPITK----DQSVKKAIEHF---LSIQTMQGTFLQ 55 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a~~~~~~----~~~~~~i~~~l---~~~~t~~a~F~Q 55 (204)
|+|+++..++++... +.+.++.++.+. .+.++++.+.+ ..+-++.---++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~iD~~~~~~m~~~~iPG~avavv~ 57 (377)
T PRK10662 1 MKRALLLSAALLAAS-LTSVAAAQPIADPLLASDIVDRYAQHIFYGSGATGMALVVID 57 (377)
T ss_pred CCHHHHHHHHHHHHH-HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 916899999999999-885048765578025778899999999985799848999998
No 42
>PRK11627 hypothetical protein; Provisional
Probab=28.99 E-value=35 Score=14.33 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88999999999999
Q gi|254780798|r 5 LYKSVIGVVILFFY 18 (204)
Q Consensus 5 ~mk~i~~~~i~~~~ 18 (204)
|||+++..++.+++
T Consensus 1 ~mkk~~~~l~a~~l 14 (192)
T PRK11627 1 MLKKILFPLVALFM 14 (192)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 92879999999999
No 43
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=26.68 E-value=12 Score=17.00 Aligned_cols=22 Identities=5% Similarity=0.088 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8999999999999999997403
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAA 27 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~ 27 (204)
|+|++..++.+++++.+.+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (551)
T PRK09558 1 MMKLLKGLVALALLAALALCGS 22 (551)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9258999999999999874067
No 44
>pfam10504 DUF2452 Protein of unknown function (DUF2452). This protein is found in eukaryotes but its function is unknown.
Probab=26.31 E-value=44 Score=13.79 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=14.3
Q ss_pred EECCCEEEEEECCCCEEE
Q ss_conf 966986999971664157
Q gi|254780798|r 68 MARPSKFYFKYSSPSSVS 85 (204)
Q Consensus 68 ~kkP~k~rw~y~~P~~~~ 85 (204)
-++||+++.-|..+..+.
T Consensus 89 ~k~PG~iYhLY~r~~G~~ 106 (160)
T pfam10504 89 VKKPGNIYHLYKRPSGQT 106 (160)
T ss_pred EECCCCEEEEEECCCCCE
T ss_conf 647896789998699987
No 45
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=25.66 E-value=45 Score=13.73 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFP 23 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~ 23 (204)
||+++..++++++++..+
T Consensus 1 mkk~~~~~~~~~~~~~~~ 18 (643)
T pfam10566 1 MKKLTIILLAFLLLIGNL 18 (643)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 950257899999999765
No 46
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.64 E-value=45 Score=13.72 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=30.2
Q ss_pred CEEEEEEEEECCCEEE--EEECCCCEEEEEEECEEEEEEECCCCC
Q ss_conf 5599999996698699--997166415777512059997133343
Q gi|254780798|r 60 YVMKGEFFMARPSKFY--FKYSSPSSVSLISDGSNIAVYNAKLDT 102 (204)
Q Consensus 60 ~~~~G~~~~kkP~k~r--w~y~~P~~~~iv~~g~~l~~~d~~~~q 102 (204)
.-.+|.+.+-|||..+ |+ ++..|..+.++..||-+.+.
T Consensus 2 tayEG~vkvPk~~~vkkGW~-----r~yvVv~~~Kl~lYd~~~dk 41 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGWQ-----RALVVVCDFKLFLYDIAEDR 41 (122)
T ss_pred CCEEEEEECCCCCCCCCCCE-----EEEEEEECCEEEEEECCCCC
T ss_conf 53057785258887655735-----88999967889998678765
No 47
>TIGR02516 type_III_yscC type III secretion outer membrane pore, YscC/HrcC family; InterPro: IPR003522 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia . The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis . However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself , type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. This family aids in the structural assembly of the invasion complex . Another characteristic of this family is its ability to form a channel through the outer bacterial membrane, allowing secretion to take place. Members include the Salmonella InvG and SpiA gene, the Shigella MxiD, and the Yersinia Kim5 and YscC proteins. Plant pathogen members include the Hypersensitivity Response (HR) genes of Burkholderia and Erwinia.; GO: 0009306 protein secretion.
Probab=24.68 E-value=47 Score=13.62 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHHHHH
Q ss_conf 31017999999861267069999996189559999999669869999716641577751205999713334321011111
Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYPLRY 110 (204)
Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~~~~ 110 (204)
++.+.+..+-+-|....+..--+.....-+.-+|+|-.+.|.+|.=+--.-+.-.=.-||+.|++|+...-.-...++..
T Consensus 6 a~~~~L~~lL~Dfa~~~~~~v~~S~~v~R~~vtG~f~~~~P~~fL~~L~~~~~l~WYyDG~~Lyiy~~~E~~~~~i~l~~ 85 (508)
T TIGR02516 6 AEGESLRALLADFAASYGIPVVISSKVNRGTVTGKFEDDNPQKFLDKLAATFGLVWYYDGNVLYIYKASEIKRAVISLRH 85 (508)
T ss_pred ECCCCHHHHHHHHHHCCCCCEEECCCEECCCEEEEEECCCHHHHHHHHHHHCCEEEEEECCEEEEECCCCEEEEEECCCH
T ss_conf 44887799999987407825897484112631088705683799998876266589975878889576541776742665
Q ss_pred HHHHH---HCCH-HHHHHHHCCCCCCCCCCEEE
Q ss_conf 12332---1000-12122210113223572799
Q gi|254780798|r 111 MAFSV---IFSN-NQHVIQESIQRVESNNSFIT 139 (204)
Q Consensus 111 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ 139 (204)
..+.- .+.. .-..+..+-.........+.
T Consensus 86 ~~~~~L~~~L~~~~~l~~~rfp~r~d~~~~~v~ 118 (508)
T TIGR02516 86 ASANELRKALRRTSGLYDPRFPVRGDPTSGTVY 118 (508)
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEE
T ss_conf 449999998523320036788853057787799
No 48
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=24.21 E-value=48 Score=13.57 Aligned_cols=22 Identities=5% Similarity=0.011 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999999999740
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNA 26 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a 26 (204)
|||+++.+++.++.++.+++|+
T Consensus 1 mkkK~i~~~~~~~svl~LaaC~ 22 (285)
T PRK03002 1 MRGKHIFIITALISILMLSACG 22 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9601899999999999999845
No 49
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=23.81 E-value=49 Score=13.52 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=40.9
Q ss_pred HCCCEEEEEEEEEECC----------------CEEEEEEEEECC---CEEEEEECCCCEEEEEEECEEEEEEECCCCCCC
Q ss_conf 1267069999996189----------------559999999669---869999716641577751205999713334321
Q gi|254780798|r 44 LSIQTMQGTFLQEDAG----------------YVMKGEFFMARP---SKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWS 104 (204)
Q Consensus 44 ~~~~t~~a~F~Q~~~~----------------~~~~G~~~~kkP---~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~ 104 (204)
++....+|+..+.+++ ++.+|+-++.-| .+++-.|..|.. -+.++...|++-.-..
T Consensus 52 ~gc~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~~~a~LkVsF~~pF~-----g~Y~Vl~~d~eYs~ai 126 (174)
T COG3040 52 KGCVQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNATRAKLKVSFFGPFY-----GDYWVLALDPEYSWAI 126 (174)
T ss_pred HCCEEEEEEEEEECCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCC-----CCEEEEEECCCCCEEE
T ss_conf 15010475899853896588813555787774131344898158641079998338863-----5379999778754899
Q ss_pred CHHHHHHHHHHH
Q ss_conf 011111123321
Q gi|254780798|r 105 VYPLRYMAFSVI 116 (204)
Q Consensus 105 ~~~~~~~~~~~~ 116 (204)
+-+++...+.++
T Consensus 127 VgsPdr~ylWlL 138 (174)
T COG3040 127 VGSPDREYLWLL 138 (174)
T ss_pred EECCCCCEEEEE
T ss_conf 808986258999
No 50
>PRK10925 superoxide dismutase; Provisional
Probab=23.01 E-value=17 Score=16.19 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEE
Q ss_conf 444310179999998612670699999961895599999996-698699997
Q gi|254780798|r 28 YPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKY 78 (204)
Q Consensus 28 ~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y 78 (204)
......+..+.|++.+.|.+.|...|.+...+...+|-.++- +.|+++..-
T Consensus 92 ~~~~~g~L~~~I~~~FGS~d~fk~~F~~aa~~~fGSGW~WLv~~~~kL~i~~ 143 (206)
T PRK10925 92 GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGDKLAVVS 143 (206)
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEE
T ss_conf 9999859999999985899999999999985378762799997599678985
No 51
>PTZ00334 trans-sialidase; Provisional
Probab=22.55 E-value=38 Score=14.12 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999999999740
Q gi|254780798|r 5 LYKSVIGVVILFFYSAIFPFNA 26 (204)
Q Consensus 5 ~mk~i~~~~i~~~~~~~~~~~a 26 (204)
|-|++|...+++.+++.+||..
T Consensus 39 MSRrvF~SAVLLLlvVmMCCgs 60 (780)
T PTZ00334 39 MSRRVFTSAVLLLLVVMMCCGS 60 (780)
T ss_pred CCHHHHHHHHHHHHHHHEECCC
T ss_conf 5134467789999998420898
No 52
>pfam10172 DDA1 Det1 complexing ubiquitin ligase. DDA1 (De-etiolated 1, Damaged DNA binding protein 1 associated 1) protein binds strongly with DDB1 and Det1 forming a DDD complex which is part of the ubiquitin conjugation system.
Probab=21.54 E-value=44 Score=13.79 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=22.8
Q ss_pred EEEEEEE--C-CCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEE
Q ss_conf 9999961--8-955999999966986999971664157775120599
Q gi|254780798|r 51 GTFLQED--A-GYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIA 94 (204)
Q Consensus 51 a~F~Q~~--~-~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~ 94 (204)
-+|.|-. . .+.+.|....--|-+ ++.+|.+|+|+.|...+.
T Consensus 12 ~NFs~~~~d~~~k~s~~rp~vY~~t~---~~~pp~~QvI~td~~nIL 55 (66)
T pfam10172 12 GNFSQFHPSDVSKSSNGRPSVYLPTH---RTYPPSEQVIVTDKTNIL 55 (66)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC---CCCCCCCCEEEECCCEEH
T ss_conf 32000577788654455767784257---778983127862462328
No 53
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=20.62 E-value=55 Score=13.25 Aligned_cols=33 Identities=3% Similarity=-0.068 Sum_probs=19.7
Q ss_pred CCEEEEEEEEECCCCEEEEEEEEEECCCCCCHH
Q ss_conf 842999999967998799999743228868965
Q gi|254780798|r 159 SYRLLNWKIMDSSRRYSIIKILKYKENTVLDPK 191 (204)
Q Consensus 159 ~~~l~~~~i~D~~G~~t~i~f~ni~~N~~i~~~ 191 (204)
.+.+++=+-+--.+..-.|.++-+..-..|+.+
T Consensus 166 nL~I~G~k~v~vn~~~~~i~~sGiVrp~DI~~~ 198 (238)
T PRK12696 166 LLQVEGARETRVNDETQYIVVSGLVRSRDVASD 198 (238)
T ss_pred CEEEEEEEEEEECCCEEEEEEEEEECHHHCCCC
T ss_conf 599999899998898899999999888997999
No 54
>COG4309 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=58 Score=13.13 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=17.3
Q ss_pred EEEECCCEEEEEECCCCEEEEEEECEEEEEEECC
Q ss_conf 9996698699997166415777512059997133
Q gi|254780798|r 66 FFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAK 99 (204)
Q Consensus 66 ~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~ 99 (204)
+....||+|-|+|.. +|..+|..+..
T Consensus 52 L~~~~pg~f~wey~e--------~Gp~vwRv~i~ 77 (98)
T COG4309 52 LSTEFPGKFGWEYLE--------NGPEVWRVEIK 77 (98)
T ss_pred HHHCCCCCCEEEEEC--------CCCEEEEEEEE
T ss_conf 620587553048814--------79837998854
Done!