HHsearch alignment of GI: 254780798 and MMDB domain: 3bk5_A_
>3bk5_A (A:) Putative outer membrane lipoprotein-sorting protein; putative outer membrane protein domain, PSI-2; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=3.2e-13 Score=93.15 Aligned_cols=169 Identities=11% Similarity=-0.039 Sum_probs=120.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEEEEEE---CCC-EE-EEEEEE----ECCCEEEEEECCCCE--------EEEEEEC
Q ss_conf 444310179999998612670699999961---895-59-999999----669869999716641--------5777512
Q gi|254780798|r 28 YPITKDQSVKKAIEHFLSIQTMQGTFLQED---AGY-VM-KGEFFM----ARPSKFYFKYSSPSS--------VSLISDG 90 (204)
Q Consensus 28 ~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~---~~~-~~-~G~~~~----kkP~k~rw~y~~P~~--------~~iv~~g 90 (204)
.+..+++++.++.+.+...++++|.|.++. .+. .. .+..+. .+|+++||++..|.. +.++.||
T Consensus 2 ~~~t~~eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~~~v~dG 81 (237)
T 3bk5_A 2 NAEKGLEIAQERKARDEGWGDSIATXEXILKNAQGESSTRLXRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGA 81 (237)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEEEEEEEEECCC-CCEEEEEEEEEECCTTSCCEEEEEEEESTTTTTCEEEEECCSSSC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 46789999999775124878817999999996899899999999997527877558999827741158189998615888
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHC-----CHH-HHHHHHCCC--------CCCCCCCEEEEECCCCCCCCEEEEEEE
Q ss_conf 059997133343210111111233210-----001-212221011--------322357279972046666634799993
Q gi|254780798|r 91 SNIAVYNAKLDTWSVYPLRYMAFSVIF-----SNN-QHVIQESIQ--------RVESNNSFITIFFKDDFMGNMISVTFD 156 (204)
Q Consensus 91 ~~l~~~d~~~~q~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~l~f~ 156 (204)
+.+|.|+|..+++.+.+.......+.. ... ......... .+.....+.+.++........+.+++|
T Consensus 82 ~~~w~y~p~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~~~~g~e~v~g~~~y~l~l~pk~~~~~~~~~~lwvd 161 (237)
T 3bk5_A 82 DDQWLYLPALKRVKRISSRNKSGPFXGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLD 161 (237)
T ss_dssp CEEEEEETTTTEEEECCGGGTTSBSTTSSCBGGGGSCCCGGGEEEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEE
T ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCEECCEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf 33798736677069857423567643453232443024300010010143000881499999616877776306999999
Q ss_pred CCCCEEEEEEEEECCC--------------------------------CEEEEEEEEEECCCCCCHHHCCCC
Q ss_conf 6984299999996799--------------------------------879999974322886896551268
Q gi|254780798|r 157 RLSYRLLNWKIMDSSR--------------------------------RYSIIKILKYKENTVLDPKVFEIP 196 (204)
Q Consensus 157 ~~~~~l~~~~i~D~~G--------------------------------~~t~i~f~ni~~N~~i~~~~F~f~ 196 (204)
.+++.+.+++..|..| ..|++.+++++.|++|+++.|.-+
T Consensus 162 ~~t~~p~k~~~~~~~g~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~g~~t~~~~~~i~~n~~i~~~~Fs~~ 233 (237)
T 3bk5_A 162 KAHYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTXAXTNHQTGKSTELNTSDLRFQTGLEENDFNKN 233 (237)
T ss_dssp TTTCCEEEEEEEETTSCEEEEEEEEEEEEETTTEEEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGGCGG
T ss_pred CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHCCHH
T ss_conf 888768777777069968899991441320596542189999907899989999997882899894888986