Query gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 112 out of 1275 Neff 8.8 Searched_HMMs 33803 Date Wed Jun 1 13:33:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780798.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2w7q_A Outer-membrane lipopro 100.0 2.3E-28 6.9E-33 178.4 19.4 185 19-203 6-202 (204) 2 >1iwl_A P20, outer-membrane li 100.0 3.9E-28 1.1E-32 177.2 19.2 167 34-203 1-178 (182) 3 >3buu_A Uncharacterized LOLA s 99.8 7E-19 2.1E-23 125.0 14.3 171 25-195 2-192 (229) 4 >2v43_A RSEB, sigma-E factor r 99.6 1E-18 3E-23 124.2 -8.6 166 32-200 2-181 (181) 5 >3bk5_A Putative outer membran 99.6 3.2E-13 9.3E-18 93.2 16.2 169 28-196 2-233 (237) 6 >3hun_A Penicillin-binding pro 84.7 0.9 2.7E-05 22.9 3.2 70 2-81 19-90 (221) 7 >2byo_A Lipoprotein LPPX; lipi 65.1 8.3 0.00025 17.5 16.0 158 30-188 22-206 (207) 8 >3dw0_A Class A carbapenemase 45.9 13 0.00038 16.4 2.1 41 4-44 1-41 (294) 9 >2qgu_A Probable signal peptid 45.2 8.3 0.00025 17.5 1.0 18 6-23 2-19 (155) 10 >1hn0_A Chondroitin ABC lyase 37.2 9.4 0.00028 17.2 0.3 56 48-103 39-123 (241) 11 >1p99_A Hypothetical protein P 34.4 5.3 0.00016 18.6 -1.3 23 36-58 52-74 (183) 12 >1kmo_A FECA, iron(III) dicitr 32.9 11 0.00031 16.9 0.0 32 62-93 73-106 (774) 13 >1coj_A Protein (superoxide di 27.8 5.5 0.00016 18.5 -2.2 68 30-97 3-71 (120) 14 >1jb0_F Photosystem 1 reaction 27.5 17 0.00051 15.7 0.3 25 6-30 1-25 (79) 15 >2vx5_A Cellvibrio japonicus m 26.9 16 0.00046 16.0 0.0 53 3-55 1-61 (396) 16 >2vzs_A CSXA, EXO-beta-D-gluco 25.0 18 0.00052 15.7 0.0 21 1-21 1-21 (225) 17 >1w6s_A Methanol dehydrogenase 24.9 40 0.0012 13.6 2.6 15 89-103 31-45 (49) 18 >1xre_A SODA-2, superoxide dis 24.3 5 0.00015 18.7 -2.9 67 31-97 3-70 (113) 19 >2rcv_A Superoxide dismutase [ 24.1 3.7 0.00011 19.5 -3.6 67 31-97 4-71 (109) 20 >1dbg_A Chondroitinase B; beta 23.5 34 0.001 14.1 1.2 43 6-48 1-43 (474) 21 >3c8v_A Putative acetyltransfe 22.3 22 0.00066 15.1 0.1 31 62-92 211-241 (317) 22 >2cw2_A Superoxide dismutase 1 20.5 4.6 0.00013 19.0 -3.7 65 31-95 3-68 (109) No 1 >>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, periplasm, chaperone; 1.88A {Pseudomonas aeruginosa} (A:) Probab=99.97 E-value=2.3e-28 Score=178.44 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=149.5 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEC---C---CEEEEEEEEECCCEEEEEECCCCEEEEEEECEE Q ss_conf 9999974034443101799999986126706999999618---9---559999999669869999716641577751205 Q gi|254780798|r 19 SAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDA---G---YVMKGEFFMARPSKFYFKYSSPSSVSLISDGSN 92 (204) Q Consensus 19 ~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~---~---~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~ 92 (204) ++++++.++.+..+++.++++.++++++++++|+|+|+.. + .+++|++++++|+++||+|.+|..+.+|.||+. T Consensus 6 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~r~~~~~p~~~~~v~~G~~ 85 (204) T 2w7q_A 6 HHHLVPRGSIAIDDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTDAPNEQLLISNGEK 85 (204) T ss_dssp -------CCCSSCCHHHHHHHHHHHHTCSEEEEEEEEEEECTTSCCEEEEEEEEEEETTTEEEEEECSSSCEEEEEETTE T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCEEEEEECCCE T ss_conf 20232035445375689999999984357289999999965889757888999999759989999838870799984988 Q ss_pred EEEEECCCCCCCCHHHHHH----HHHHHCCHHHHHHHHCCCCCCCCCCE-EEEECCCCCCCCEEEEEEECCCCEEEEEEE Q ss_conf 9997133343210111111----23321000121222101132235727-997204666663479999369842999999 Q gi|254780798|r 93 IAVYNAKLDTWSVYPLRYM----AFSVIFSNNQHVIQESIQRVESNNSF-ITIFFKDDFMGNMISVTFDRLSYRLLNWKI 167 (204) Q Consensus 93 l~~~d~~~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i 167 (204) +|+|+|+.++++..+.... +..++..................... .+...+.........++++.++..++++++ T Consensus 86 ~~~y~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~l~l~p~~~~~~~~~~~id~~~~~p~~~~~ 165 (204) T 2w7q_A 86 VWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGGNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQM 165 (204) T ss_dssp EEEEETTTTEEEEECHHHHTTTCGGGGGGSCHHHHTTTEEEEEEEETTEEEEEEEESSSCSSCSEEEEEEETTEEEEEEE T ss_pred EEEECCCCCCCEECCHHHHHHCCHHHHHCCCCCHHHHHEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEE T ss_conf 99986422511001312210005477761663000000133341257538999845787764569999955993899999 Q ss_pred EECCCCEEEEEEEEEECCCCCCHHHCCC-CCCCCCCC Q ss_conf 9679987999997432288689655126-85313448 Q gi|254780798|r 168 MDSSRRYSIIKILKYKENTVLDPKVFEI-PYDKIHNI 203 (204) Q Consensus 168 ~D~~G~~t~i~f~ni~~N~~i~~~~F~f-~~~~~~~~ 203 (204) .|..|+.+++.|++++.|+++++++|.| |+++...| T Consensus 166 ~~~~g~~~~i~f~~~~~n~~i~~~~F~~~~P~~~~vv 202 (204) T 2w7q_A 166 IDGVGQRTNILFFDVKMNEALDAKQFTFDVPPGVDVI 202 (204) T ss_dssp ECTTCCEEEEEEEEEEESCCCCGGGGCCCCCTTCEEE T ss_pred EECCCCEEEEEEEEEEECCCCCHHHEEECCCCCCEEE T ss_conf 9789899999999546089989535889795997575 No 2 >>1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta barrel, protein transport; 1.65A {Escherichia coli} (A:) Probab=99.96 E-value=3.9e-28 Score=177.20 Aligned_cols=167 Identities=14% Similarity=0.213 Sum_probs=138.0 Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEC------CCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHH Q ss_conf 1799999986126706999999618------9559999999669869999716641577751205999713334321011 Q gi|254780798|r 34 QSVKKAIEHFLSIQTMQGTFLQEDA------GYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYP 107 (204) Q Consensus 34 ~~~~~i~~~l~~~~t~~a~F~Q~~~------~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~ 107 (204) ++++++.++++++++++|+|+|+.. ..+++|+++++||+++||+|.+|.++.+|.||+.+|+|+|+++|++..+ T Consensus 1 dvl~~~~~~~~~~~s~~a~f~q~~~~~~~~~~~~s~G~~~~~kp~~~r~~~~~P~~~~~v~dg~~~~~y~~~~~~v~~~~ 80 (182) T 1iwl_A 1 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW 80 (182) T ss_dssp CHHHHHHHHTTSCSEEEEEEEEEEEC-----CEEEEEEEEEETTTEEEEEECSSSCEEEEEESSEEEEEEGGGTEEEEEE T ss_pred CHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEECC T ss_conf 97899999984667489999999975889726789999999829989999848862299983868999766456324225 Q ss_pred HHHHHH----HHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEE Q ss_conf 111123----3210001212221011322357279972046666634799993698429999999679987999997432 Q gi|254780798|r 108 LRYMAF----SVIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYK 183 (204) Q Consensus 108 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~ 183 (204) ...... .++.+........ ......+..+.+.++........+.|+++.++. +.++.+.|..|+.+++.|+++ T Consensus 81 ~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~l~l~pk~~~~~~~~~~i~~d~~~~-i~~~~i~~~~g~~~~i~f~~~- 157 (182) T 1iwl_A 81 LKDATGNTPFMLIARNQSSDWQQ-YNIKQNGDDFVLTPKASNGNLKQFTINVGRDGT-IHQFSAVEQDDQRSSYQLKSQ- 157 (182) T ss_dssp GGGCCCCSHHHHHHHCCHHHHTT-EEEEEETTEEEEEESSSSCSEEEEEEEECTTCC-EEEEEEEETTCCEEEEEEEEE- T ss_pred HHHHHHCCHHHHHCCCHHHHHHH-HHHCCCCEEEEEEECCCCCCCCEEEEEECCCCC-EEEEEEEECCCCEEEEEEEEE- T ss_conf 35643117678752441555543-001033407999984777663179999988996-899999988989999999800- Q ss_pred CCCCCCHHHCCC-CCCCCCCC Q ss_conf 288689655126-85313448 Q gi|254780798|r 184 ENTVLDPKVFEI-PYDKIHNI 203 (204) Q Consensus 184 ~N~~i~~~~F~f-~~~~~~~~ 203 (204) .|++++++.|+| |+++.++| T Consensus 158 ~n~~i~~~~F~~~~p~g~~vv 178 (182) T 1iwl_A 158 QNGAVDAAKFTFTPPQGVTVD 178 (182) T ss_dssp EESCCCGGGGSCCCCSSCEEE T ss_pred ECCCCCHHHEEECCCCCCEEE T ss_conf 779999788888795998688 No 3 >>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} (A:) Probab=99.81 E-value=7e-19 Score=125.04 Aligned_cols=171 Identities=10% Similarity=0.037 Sum_probs=131.7 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEC-----CCEEEEEEEEECCCEEEEEECCCC---EEEEEEECEEEEEE Q ss_conf 4034443101799999986126706999999618-----955999999966986999971664---15777512059997 Q gi|254780798|r 25 NAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDA-----GYVMKGEFFMARPSKFYFKYSSPS---SVSLISDGSNIAVY 96 (204) Q Consensus 25 ~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~-----~~~~~G~~~~kkP~k~rw~y~~P~---~~~iv~~g~~l~~~ 96 (204) +++.+..+++++.++.+.++++++++|+|+|+.. .....|++++++|+++||+|..|. .+.+++||+.+|.| T Consensus 2 a~~~~~ta~~il~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~p~~~~~~~~~~dG~~~w~y 81 (229) T 3buu_A 2 NAKSAVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVXITEPASERGQAILXKGRDLWVF 81 (229) T ss_dssp ----CCCHHHHHHHHHHHHSCSSCEEEEEEEEEEETTEECCCEEEEEEEETTTEEEEEEEESTTTTTCEEEEETTEEEEE T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCEEE T ss_conf 85234799999999986315788879999999965997579999999972893599999168533580899937651888 Q ss_pred ECCCCCCCCHHHHHHHHHHHCCHHHH---HHHHC--------CCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEE Q ss_conf 13334321011111123321000121---22210--------11322357279972046666634799993698429999 Q gi|254780798|r 97 NAKLDTWSVYPLRYMAFSVIFSNNQH---VIQES--------IQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNW 165 (204) Q Consensus 97 d~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~ 165 (204) +|.++++...+..+............ ..... ...+.....+.+.++........+.+++|.+++.+.++ T Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~g~~~~vl~~~pk~~~~~~~~~~l~id~~~~~p~k~ 161 (229) T 3buu_A 82 XPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKA 161 (229) T ss_dssp CTTCSSCEEECTTSEEETTEEHHHHHCCCSBTTEEEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEE T ss_pred CCCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEE T ss_conf 44458338925765657874422000043100233788300251564489999960787777645999998666368999 Q ss_pred EEEECCCCEE-EEEEEEEECCCCCCHHHCCC Q ss_conf 9996799879-99997432288689655126 Q gi|254780798|r 166 KIMDSSRRYS-IIKILKYKENTVLDPKVFEI 195 (204) Q Consensus 166 ~i~D~~G~~t-~i~f~ni~~N~~i~~~~F~f 195 (204) ++.|..|+.+ ++.|++++.|..+....+.+ T Consensus 162 ~~~d~~g~~~~~~~~~~~~~~~~~~~p~~~~ 192 (229) T 3buu_A 162 EFYSVSGRLLKTSRYENFDNILGEXRPTRII 192 (229) T ss_dssp EEECTTSCEEEEEEEEEEEEETTEEEEEEEE T ss_pred EEECCCCCEEEEEEEEEEEEECCEEEEEEEE T ss_conf 9981799488999988869988998768999 No 4 >>2v43_A RSEB, sigma-E factor regulatory protein RSEB; sensor for periplasmic stress, periplasmic, lipoprotein binding; 2.37A {Escherichia coli} PDB: 2v42_A 2p4b_A* (A:1-181) Probab=99.61 E-value=1e-18 Score=124.16 Aligned_cols=166 Identities=8% Similarity=0.041 Sum_probs=117.1 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEEC--C--CEEEEEEEEECCC-EEEEEECCCCEEEEEEECEEEEEEECCCCCCCCH Q ss_conf 101799999986126706999999618--9--5599999996698-6999971664157775120599971333432101 Q gi|254780798|r 32 KDQSVKKAIEHFLSIQTMQGTFLQEDA--G--YVMKGEFFMARPS-KFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVY 106 (204) Q Consensus 32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~--~--~~~~G~~~~kkP~-k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~ 106 (204) +++.+.++.+. .++++|+|+|+.. + ...++.....+|+ .+||+|.+|..+.++.||+.+|+|+|+.+++... T Consensus 2 a~~il~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dg~~~w~y~p~~~~~~~~ 78 (181) T 2v43_A 2 SGALLQQMNLA---SQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLN 78 (181) T ss_dssp ---CHHHHHHH---HHHHHHHSEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEECSSSCCEEEEETTEEEEECTTSCC T ss_pred CCCCHHHHHHH---HHHHHHHCCEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEECCCCCEEEEEECCEEEEECCCCCE T ss_conf 97049999999---998888578359999993991678999999749949999883699840899989999998689842 Q ss_pred HHHHH--HHHHHCCHHHHHHHHCCC------CCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCE-EEE Q ss_conf 11111--233210001212221011------322357279972046666634799993698429999999679987-999 Q gi|254780798|r 107 PLRYM--AFSVIFSNNQHVIQESIQ------RVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRY-SII 177 (204) Q Consensus 107 ~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~-t~i 177 (204) +.... ....+............. .........+...+.+.....+.++++.+++.+.++++.|..|+. +++ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~g~~~~~l~l~pk~~~~~~~~lwid~~~~~p~k~~~~d~~g~~~~~i 158 (181) T 2v43_A 79 GDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 158 (181) T ss_dssp EEEECSSCTTSSCGGGGCCHHHHTTTEEEEEEEEEEETTEEEEEEEEEETTSCSCEEEEEEETTTCCEEEEEEECTTSCE T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHCEEEEECCCCEECCCEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEECCCCCE T ss_conf 78755545555720034475567426027976874899948899999958887789999997677957999986489969 Q ss_pred EEEEEECCCCCCHHHCCCCCCCC Q ss_conf 99743228868965512685313 Q gi|254780798|r 178 KILKYKENTVLDPKVFEIPYDKI 200 (204) Q Consensus 178 ~f~ni~~N~~i~~~~F~f~~~~~ 200 (204) .|++++.|.++++++|+|.+.+| T Consensus 159 ~~~~~~~n~~i~~~~F~~~~~~~ 181 (181) T 2v43_A 159 RVIAFNVNQDISSSMQTLAKANL 181 (181) T ss_dssp EEEEEEEEEEEESSCCHHHHHHH T ss_pred EEEEEEEEEEECCCCCHHHHHCC T ss_conf 99999999983787685464211 No 5 >>3bk5_A Putative outer membrane lipoprotein-sorting protein; putative outer membrane protein domain, PSI-2; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} (A:) Probab=99.57 E-value=3.2e-13 Score=93.15 Aligned_cols=169 Identities=11% Similarity=-0.039 Sum_probs=120.5 Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEEEEEE---CCC-EE-EEEEEE----ECCCEEEEEECCCCE--------EEEEEEC Q ss_conf 444310179999998612670699999961---895-59-999999----669869999716641--------5777512 Q gi|254780798|r 28 YPITKDQSVKKAIEHFLSIQTMQGTFLQED---AGY-VM-KGEFFM----ARPSKFYFKYSSPSS--------VSLISDG 90 (204) Q Consensus 28 ~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~---~~~-~~-~G~~~~----kkP~k~rw~y~~P~~--------~~iv~~g 90 (204) .+..+++++.++.+.+...++++|.|.++. .+. .. .+..+. .+|+++||++..|.. +.++.|| T Consensus 2 ~~~t~~eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~~~v~dG 81 (237) T 3bk5_A 2 NAEKGLEIAQERKARDEGWGDSIATXEXILKNAQGESSTRLXRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGA 81 (237) T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEEEEEEEEECCC-CCEEEEEEEEEECCTTSCCEEEEEEEESTTTTTCEEEEECCSSSC T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCC T ss_conf 46789999999775124878817999999996899899999999997527877558999827741158189998615888 Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHC-----CHH-HHHHHHCCC--------CCCCCCCEEEEECCCCCCCCEEEEEEE Q ss_conf 059997133343210111111233210-----001-212221011--------322357279972046666634799993 Q gi|254780798|r 91 SNIAVYNAKLDTWSVYPLRYMAFSVIF-----SNN-QHVIQESIQ--------RVESNNSFITIFFKDDFMGNMISVTFD 156 (204) Q Consensus 91 ~~l~~~d~~~~q~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~l~f~ 156 (204) +.+|.|+|..+++.+.+.......+.. ... ......... .+.....+.+.++........+.+++| T Consensus 82 ~~~w~y~p~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~~~~g~e~v~g~~~y~l~l~pk~~~~~~~~~~lwvd 161 (237) T 3bk5_A 82 DDQWLYLPALKRVKRISSRNKSGPFXGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLD 161 (237) T ss_dssp CEEEEEETTTTEEEECCGGGTTSBSTTSSCBGGGGSCCCGGGEEEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEE T ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCEECCEEEEEEEECCCCCCCCCEEEEEEEE T ss_conf 33798736677069857423567643453232443024300010010143000881499999616877776306999999 Q ss_pred CCCCEEEEEEEEECCC--------------------------------CEEEEEEEEEECCCCCCHHHCCCC Q ss_conf 6984299999996799--------------------------------879999974322886896551268 Q gi|254780798|r 157 RLSYRLLNWKIMDSSR--------------------------------RYSIIKILKYKENTVLDPKVFEIP 196 (204) Q Consensus 157 ~~~~~l~~~~i~D~~G--------------------------------~~t~i~f~ni~~N~~i~~~~F~f~ 196 (204) .+++.+.+++..|..| ..|++.+++++.|++|+++.|.-+ T Consensus 162 ~~t~~p~k~~~~~~~g~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~g~~t~~~~~~i~~n~~i~~~~Fs~~ 233 (237) T 3bk5_A 162 KAHYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTXAXTNHQTGKSTELNTSDLRFQTGLEENDFNKN 233 (237) T ss_dssp TTTCCEEEEEEEETTSCEEEEEEEEEEEEETTTEEEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGGCGG T ss_pred CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHCCHH T ss_conf 888768777777069968899991441320596542189999907899989999997882899894888986 No 6 >>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:1-94,A:210-336) Probab=84.69 E-value=0.9 Score=22.95 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=36.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCEEEEEEEEEECCCEEEEEEEEECCCEEEEEEC Q ss_conf 1478899999999999999999740344431017999999861--26706999999618955999999966986999971 Q gi|254780798|r 2 AFLLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL--SIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYS 79 (204) Q Consensus 2 ~~~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~--~~~t~~a~F~Q~~~~~~~~G~~~~kkP~k~rw~y~ 79 (204) +-||||+++.+++++++++++....+.|........++.+... ++. ..-.-+|-+-...-|++.++|. T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~p~~~~~~~~~~~~~----------~~~~p~~~~~~~~~gq~ly~~~ 88 (221) T 3hun_A 19 SHMAMKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLS----------AAYEPTSAVNVSQTGQLLYQYN 88 (221) T ss_dssp ----------------------------CCCSSCHHHHHHHTTCTTCC----------GGGCCSEEEEEETTSBEEEEES T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------CCCCCEEEEEECCCCCCHHEEC T ss_conf 410199999999999999997316766403678863134443667777----------5557617999999992812258 Q ss_pred CC Q ss_conf 66 Q gi|254780798|r 80 SP 81 (204) Q Consensus 80 ~P 81 (204) .- T Consensus 89 ~~ 90 (221) T 3hun_A 89 ID 90 (221) T ss_dssp TT T ss_pred CC T ss_conf 19 No 7 >>2byo_A Lipoprotein LPPX; lipid transport, membrane, palmitate; HET: HXA LNL; 2.15A {Mycobacterium tuberculosis} (A:) Probab=65.06 E-value=8.3 Score=17.51 Aligned_cols=158 Identities=10% Similarity=-0.063 Sum_probs=85.5 Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEEEEC----CCEEEEEEEEE-CCCEEEEEEC--CCCEEEEEEECEEEEEEECCCCC Q ss_conf 43101799999986126706999999618----95599999996-6986999971--66415777512059997133343 Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQEDA----GYVMKGEFFMA-RPSKFYFKYS--SPSSVSLISDGSNIAVYNAKLDT 102 (204) Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~----~~~~~G~~~~k-kP~k~rw~y~--~P~~~~iv~~g~~l~~~d~~~~q 102 (204) ..+.+++.+..+.+.++++++.+.+-+.. +...++...+. +|++++..-+ .-.+..++.-|..+|++.++-.+ T Consensus 22 ~~~~~il~~a~~a~~~~~S~~~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~vg~~~Y~~~~~~w~ 101 (207) T 2byo_A 22 PALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWS 101 (207) T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEEEEECCCSSTTEEEEEEEEETTTTEEEEEEEETTEEEEEEEEETTEEEEEETTEEE T ss_pred CCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEECCEEEECCCCCHH T ss_conf 34799999999987426649999998055678754036888766077324736873577867999999888980885431 Q ss_pred CCCHHHHH------HHHHHHCCHHHHHHHHCCCCCCCCC--CEEEE----EC-------CCCCCCCEEEEEEECCCCE-E Q ss_conf 21011111------1233210001212221011322357--27997----20-------4666663479999369842-9 Q gi|254780798|r 103 WSVYPLRY------MAFSVIFSNNQHVIQESIQRVESNN--SFITI----FF-------KDDFMGNMISVTFDRLSYR-L 162 (204) Q Consensus 103 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~-------~~~~~~~~i~l~f~~~~~~-l 162 (204) ..-..-.. .|...+..................+ ..+.. .. ..........++++.++.. . T Consensus 102 ~~~~~~~~~~~~~~dp~~~~~~~l~~~~~~~~~g~etidG~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~wVd~~g~~~~ 181 (207) T 2byo_A 102 NLGSISELSTSRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHL 181 (207) T ss_dssp EEEEHHHHHHHTC-----CCCCCSTTCEEEEEEEEEEETTEEEEEEEEEECHHHHHHHCTTCCSCEEEEEEEESSSSCCE T ss_pred HCCCCCCCCHHHHCCHHHHHHHHHHCCCCCEECCCEEECCEEEEEEEEEECHHHHHHHCCCCCCCCEEEEEECCCCCEEE T ss_conf 06744457874603956779999750688413362476887389999998789987635256787218999917998899 Q ss_pred EEEEEEECCCCEEEEEEEEEECCCCC Q ss_conf 99999967998799999743228868 Q gi|254780798|r 163 LNWKIMDSSRRYSIIKILKYKENTVL 188 (204) Q Consensus 163 ~~~~i~D~~G~~t~i~f~ni~~N~~i 188 (204) .++.+. ..+...+++|++.-...+| T Consensus 182 ~~~~~~-~~~~~~~~~~sd~g~pv~I 206 (207) T 2byo_A 182 VRASID-LGSGSIQLTQSKWNEPVNV 206 (207) T ss_dssp EEEEEE-CSSEEEEEEEESTTCCCCC T ss_pred EEEEEC-CCCCCEEEEEEECCCCCCC T ss_conf 999943-6897489998318982454 No 8 >>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} (A:) Probab=45.93 E-value=13 Score=16.43 Aligned_cols=41 Identities=7% Similarity=-0.090 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 78899999999999999999740344431017999999861 Q gi|254780798|r 4 LLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL 44 (204) Q Consensus 4 ~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~ 44 (204) |.||+.+.+++++++++..++....+......+..+.+... T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 41 (294) T 3dw0_A 1 MSLYRRLVLLSCLSWPLAGFSATALTNLVAEPFAKLEQDFG 41 (294) T ss_dssp -----------------------------CHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 92589999999999998743032432124799999998629 No 9 >>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000} (A:1-117,A:174-211) Probab=45.15 E-value=8.3 Score=17.51 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999 Q gi|254780798|r 6 YKSVIGVVILFFYSAIFP 23 (204) Q Consensus 6 mk~i~~~~i~~~~~~~~~ 23 (204) ||+++..+++++++++.. T Consensus 2 Mkr~~~~l~~~~ll~~~~ 19 (155) T 2qgu_A 2 FKKLLHSLVAGLTFVAAV 19 (155) T ss_dssp ------------------ T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 589999999999999998 No 10 >>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin digestion, mechanism; 1.90A {Proteus vulgaris} (A:1-241) Probab=37.18 E-value=9.4 Score=17.20 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=31.2 Q ss_pred EEEEEEEEEECC--CE-EEE-EEEEEC------CCEEEEEECCCCEEEEEE-------------------ECEEEEEEEC Q ss_conf 069999996189--55-999-999966------986999971664157775-------------------1205999713 Q gi|254780798|r 48 TMQGTFLQEDAG--YV-MKG-EFFMAR------PSKFYFKYSSPSSVSLIS-------------------DGSNIAVYNA 98 (204) Q Consensus 48 t~~a~F~Q~~~~--~~-~~G-~~~~kk------P~k~rw~y~~P~~~~iv~-------------------~g~~l~~~d~ 98 (204) +---+|++.... -+ ++| ++.+.- -.-++|++++.....|-. .|-.+|+|++ T Consensus 39 ~~i~~FE~~~~~a~~ts~~gs~lsiS~~hyK~G~qSL~W~w~~gs~Lti~~~~~~~~~~~~~~~~g~~~~~~~~~WIYNE 118 (241) T 1hn0_A 39 SEIYHFAQNNPLADFSSDKNSILTLSDKRSIMGNQSLLWKWKGGSSFTLHKKLIVPTDKEASKAWGRSSTPVFSFWLYNE 118 (241) T ss_dssp CEEECSCSSSTTTTEECCTTEEEEEESSSCSSSSCEEEEEEETTCEEEEECCBCCCCHHHHHHHHTSSEEEEEEEEEEES T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEECCCHHCCCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCCEEEEEEECC T ss_conf 87777650696210245776347841410002673106773388624764225314765676652557885178884047 Q ss_pred CCCCC Q ss_conf 33432 Q gi|254780798|r 99 KLDTW 103 (204) Q Consensus 99 ~~~q~ 103 (204) .--.. T Consensus 119 ~p~d~ 123 (241) T 1hn0_A 119 KPIDG 123 (241) T ss_dssp SCCSS T ss_pred CCCCC T ss_conf 77573 No 11 >>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295) Probab=34.37 E-value=5.3 Score=18.61 Aligned_cols=23 Identities=0% Similarity=-0.023 Sum_probs=13.9 Q ss_pred HHHHHHHHHCCCEEEEEEEEEEC Q ss_conf 99999986126706999999618 Q gi|254780798|r 36 VKKAIEHFLSIQTMQGTFLQEDA 58 (204) Q Consensus 36 ~~~i~~~l~~~~t~~a~F~Q~~~ 58 (204) .-...+.+..=.++.-++++-++ T Consensus 52 ~~~~v~~~~kk~Gi~Ve~v~f~d 74 (183) T 1p99_A 52 AWEKVKELAKKDDIDVEIKHFSD 74 (183) T ss_dssp HHHHHHHHHGGGTCCEEEEECSS T ss_pred HHHHHHHHHHHCCCEEEEEEECC T ss_conf 99999999997498799998378 No 12 >>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:) Probab=32.86 E-value=11 Score=16.91 Aligned_cols=32 Identities=6% Similarity=-0.122 Sum_probs=16.4 Q ss_pred EEEEEEEEC--CCEEEEEECCCCEEEEEEECEEE Q ss_conf 999999966--98699997166415777512059 Q gi|254780798|r 62 MKGEFFMAR--PSKFYFKYSSPSSVSLISDGSNI 93 (204) Q Consensus 62 ~~G~~~~kk--P~k~rw~y~~P~~~~iv~~g~~l 93 (204) ..|.|.++. ++.+...|..-..+.+....... T Consensus 73 ~~G~f~l~~~~~~~l~~s~~g~~~~~~~~~~~~~ 106 (774) T 1kmo_A 73 LHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEP 106 (774) T ss_dssp ---------------------------------- T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEECCCEEEEEE T ss_conf 6673089999999974798189992797599987 No 13 >>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} (A:93-212) Probab=27.82 E-value=5.5 Score=18.52 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=47.9 Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEECCCCEEEEEEECEEEEEEE Q ss_conf 4310179999998612670699999961895599999996-6986999971664157775120599971 Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKYSSPSSVSLISDGSNIAVYN 97 (204) Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y~~P~~~~iv~~g~~l~~~d 97 (204) .......+.|++.+.|.+.|.++|++.-.+...+|-+++- .+++++-.-+.-...-+..+..-+...| T Consensus 3 ~P~~~L~~~I~~~FGS~e~fk~~F~~aA~~~~GsGW~wl~~~~~~L~i~~t~n~~~p~~~~~~PiL~iD 71 (120) T 1coj_A 3 EPSEALKKKIEEDIGGLDACTNELKAAAMAFRGWAILGLDIFSGRLVVNGLDAHNVYNLTGLIPLIVID 71 (120) T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSEEEEEEETTTTEEEEEEESBTTBSCCTTCEEEEEEE T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEE T ss_conf 355999999998838999999999865114457437886169996489755765666522340368754 No 14 >>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:1-79) Probab=27.45 E-value=17 Score=15.70 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 8999999999999999997403444 Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPI 30 (204) Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~ 30 (204) ||+.+..++++++++.++..|.+.. T Consensus 1 Mrrl~aliL~~~l~~~~~p~A~Ad~ 25 (79) T 1jb0_F 1 MRRFLALLLVLTLWLGFTPLASADV 25 (79) T ss_dssp -----------------------CG T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 9279999999999983896301244 No 15 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=26.94 E-value=16 Score=15.97 Aligned_cols=53 Identities=4% Similarity=-0.071 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 4788999999999999999997403444--------3101799999986126706999999 Q gi|254780798|r 3 FLLYKSVIGVVILFFYSAIFPFNAAYPI--------TKDQSVKKAIEHFLSIQTMQGTFLQ 55 (204) Q Consensus 3 ~~~mk~i~~~~i~~~~~~~~~~~a~~~~--------~~~~~~~~i~~~l~~~~t~~a~F~Q 55 (204) |=|||+++.++++++++++.++.+.... ........+...+.....-.-.+-+ T Consensus 1 M~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~ 61 (396) T 2vx5_A 1 MSEKPAESAAAVADSATTTAPQSGKPETALPALIDTQATAETRALYRNLAKLRYKHLLFGH 61 (396) T ss_dssp -----------------------------CCCCSCTTCCHHHHHHHHHHHHHTTTCEEEEE T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC T ss_conf 9966256677776034434677899988877147998489999999999986289889702 No 16 >>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} (A:1-225) Probab=24.97 E-value=18 Score=15.66 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=11.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 914788999999999999999 Q gi|254780798|r 1 MAFLLYKSVIGVVILFFYSAI 21 (204) Q Consensus 1 ~~~~~mk~i~~~~i~~~~~~~ 21 (204) |+|-.||+.+.+++++++.+. T Consensus 1 m~~~~m~~~~~l~~~l~~~~~ 21 (225) T 2vzs_A 1 VSFRQKRTRIPLLAMTVTALA 21 (225) T ss_dssp --------------------- T ss_pred CCCCCCCCEEEEHHHHHHHHH T ss_conf 975433322003699999999 No 17 >>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:53-101) Probab=24.91 E-value=40 Score=13.64 Aligned_cols=15 Identities=13% Similarity=0.023 Sum_probs=9.7 Q ss_pred ECEEEEEEECCCCCC Q ss_conf 120599971333432 Q gi|254780798|r 89 DGSNIAVYNAKLDTW 103 (204) Q Consensus 89 ~g~~l~~~d~~~~q~ 103 (204) .|+.+|.|||+.... T Consensus 31 TG~~~W~ydp~~~~~ 45 (49) T 1w6s_A 31 PGTILWQDKPKQNPA 45 (49) T ss_dssp TTSEEEEECCCCCGG T ss_pred CCCEEEECCCCCCCC T ss_conf 986788624878865 No 18 >>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} (A:105-217) Probab=24.25 E-value=5 Score=18.73 Aligned_cols=67 Identities=7% Similarity=0.051 Sum_probs=48.8 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEECCCCEEEEEEECEEEEEEE Q ss_conf 310179999998612670699999961895599999996-6986999971664157775120599971 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKYSSPSSVSLISDGSNIAVYN 97 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y~~P~~~~iv~~g~~l~~~d 97 (204) ......+.|++.+.|.+.|.++|...-.+...+|-.++- .+++++.....-...-+..+..-+...| T Consensus 3 P~~~L~~aI~~~FGS~e~fk~~f~~~a~~~~GsGW~wL~~~~~~L~i~~t~n~~~p~~~~~~Pil~iD 70 (113) T 1xre_A 3 PNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGEELSVMSTPNQDTPLQEGKIPLLVID 70 (113) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEEETTEEEEEEEETTCCGGGGTCEEEEEEE T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEE T ss_conf 84899999998549999999999887650356418999814973567740476888778976899875 No 19 >>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A (A:94-202) Probab=24.10 E-value=3.7 Score=19.48 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=48.3 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEE-ECCCEEEEEECCCCEEEEEEECEEEEEEE Q ss_conf 31017999999861267069999996189559999999-66986999971664157775120599971 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFM-ARPSKFYFKYSSPSSVSLISDGSNIAVYN 97 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~-kkP~k~rw~y~~P~~~~iv~~g~~l~~~d 97 (204) ......+.|++.+.|.+.|.++|++.-.+...+|-.++ ..+++++.....-...-++.+..-+...| T Consensus 4 p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~wL~~~~~~l~i~~~~~~~~p~~~~~~pll~iD 71 (109) T 2rcv_A 4 PTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLD 71 (109) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEEEEETTCCGGGGTCEEEEEEE T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEE T ss_conf 98699999999839999999998774202466548999832880589740376787667970289850 No 20 >>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Flavobacterium heparinium} (A:1-474) Probab=23.54 E-value=34 Score=14.07 Aligned_cols=43 Identities=7% Similarity=-0.110 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCE Q ss_conf 8999999999999999997403444310179999998612670 Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQT 48 (204) Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t 48 (204) ||+++.++++.++++......+........-..|++.++..+. T Consensus 1 Mk~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~tiq~Ai~~a~~ 43 (474) T 1dbg_A 1 MKMLNKLAGYLLPIMVLLNVAPCLGQVVASNETLYQVVKEVKP 43 (474) T ss_dssp -------------------------CEECSHHHHHHHHHHCCT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHCCC T ss_conf 9069999999999999860120100550883899999971899 No 21 >>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint center for structural genomics, JCSG; 2.28A {Desulfovibrio desulfuricans subsp} (A:1-233,A:413-496) Probab=22.31 E-value=22 Score=15.08 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.7 Q ss_pred EEEEEEEECCCEEEEEECCCCEEEEEEECEE Q ss_conf 9999999669869999716641577751205 Q gi|254780798|r 62 MKGEFFMARPSKFYFKYSSPSSVSLISDGSN 92 (204) Q Consensus 62 ~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~ 92 (204) .-|.+|++.|+.+-+.|.-|.+...-.+|.. T Consensus 211 ~pG~vWir~~~~feF~Y~y~~~vfa~~dge~ 241 (317) T 3c8v_A 211 EPGQIWIKSGDELEFHYSFDKAIFAKVDGEV 241 (317) T ss_dssp CTTEEEEECTTSEEEEEECCHHHHTTCEEEE T ss_pred CCCEEEECCCEEEEEEEEECCCECCEECCCE T ss_conf 5877997488068510487344054051737 No 22 >>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} (A:118-226) Probab=20.50 E-value=4.6 Score=18.98 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=45.2 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEECCCCEEEEEEECEEEEE Q ss_conf 310179999998612670699999961895599999996-69869999716641577751205999 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKYSSPSSVSLISDGSNIAV 95 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y~~P~~~~iv~~g~~l~~ 95 (204) ......+.|++.+.|.+.|..+|++.-.+...+|-+++- .+++++..-..-...-+..+..-+.. T Consensus 3 P~~~L~~~I~~~FGS~d~fk~~f~~~A~~~~GsGW~wl~~~~~~L~i~~~~n~~~~~~~~~~Pll~ 68 (109) T 2cw2_A 3 PTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVWLIADDGKLKIVQGHDAGNPIRESKTPLMN 68 (109) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEESSSCEEEEEEETTCCGGGTTCEEEEE T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCEEEE T ss_conf 985799999998522999999999987067887479998567677642145668985457822899 Done!