Query         gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs    112 out of 1275
Neff          8.8 
Searched_HMMs 33803
Date          Wed Jun  1 13:33:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780798.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2w7q_A Outer-membrane lipopro 100.0 2.3E-28 6.9E-33  178.4  19.4  185   19-203     6-202 (204)
  2 >1iwl_A P20, outer-membrane li 100.0 3.9E-28 1.1E-32  177.2  19.2  167   34-203     1-178 (182)
  3 >3buu_A Uncharacterized LOLA s  99.8   7E-19 2.1E-23  125.0  14.3  171   25-195     2-192 (229)
  4 >2v43_A RSEB, sigma-E factor r  99.6   1E-18   3E-23  124.2  -8.6  166   32-200     2-181 (181)
  5 >3bk5_A Putative outer membran  99.6 3.2E-13 9.3E-18   93.2  16.2  169   28-196     2-233 (237)
  6 >3hun_A Penicillin-binding pro  84.7     0.9 2.7E-05   22.9   3.2   70    2-81     19-90  (221)
  7 >2byo_A Lipoprotein LPPX; lipi  65.1     8.3 0.00025   17.5  16.0  158   30-188    22-206 (207)
  8 >3dw0_A Class A carbapenemase   45.9      13 0.00038   16.4   2.1   41    4-44      1-41  (294)
  9 >2qgu_A Probable signal peptid  45.2     8.3 0.00025   17.5   1.0   18    6-23      2-19  (155)
 10 >1hn0_A Chondroitin ABC lyase   37.2     9.4 0.00028   17.2   0.3   56   48-103    39-123 (241)
 11 >1p99_A Hypothetical protein P  34.4     5.3 0.00016   18.6  -1.3   23   36-58     52-74  (183)
 12 >1kmo_A FECA, iron(III) dicitr  32.9      11 0.00031   16.9   0.0   32   62-93     73-106 (774)
 13 >1coj_A Protein (superoxide di  27.8     5.5 0.00016   18.5  -2.2   68   30-97      3-71  (120)
 14 >1jb0_F Photosystem 1 reaction  27.5      17 0.00051   15.7   0.3   25    6-30      1-25  (79)
 15 >2vx5_A Cellvibrio japonicus m  26.9      16 0.00046   16.0   0.0   53    3-55      1-61  (396)
 16 >2vzs_A CSXA, EXO-beta-D-gluco  25.0      18 0.00052   15.7   0.0   21    1-21      1-21  (225)
 17 >1w6s_A Methanol dehydrogenase  24.9      40  0.0012   13.6   2.6   15   89-103    31-45  (49)
 18 >1xre_A SODA-2, superoxide dis  24.3       5 0.00015   18.7  -2.9   67   31-97      3-70  (113)
 19 >2rcv_A Superoxide dismutase [  24.1     3.7 0.00011   19.5  -3.6   67   31-97      4-71  (109)
 20 >1dbg_A Chondroitinase B; beta  23.5      34   0.001   14.1   1.2   43    6-48      1-43  (474)
 21 >3c8v_A Putative acetyltransfe  22.3      22 0.00066   15.1   0.1   31   62-92    211-241 (317)
 22 >2cw2_A Superoxide dismutase 1  20.5     4.6 0.00013   19.0  -3.7   65   31-95      3-68  (109)

No 1  
>>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, periplasm, chaperone; 1.88A {Pseudomonas aeruginosa} (A:)
Probab=99.97  E-value=2.3e-28  Score=178.44  Aligned_cols=185  Identities=16%  Similarity=0.193  Sum_probs=149.5

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEC---C---CEEEEEEEEECCCEEEEEECCCCEEEEEEECEE
Q ss_conf             9999974034443101799999986126706999999618---9---559999999669869999716641577751205
Q gi|254780798|r   19 SAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDA---G---YVMKGEFFMARPSKFYFKYSSPSSVSLISDGSN   92 (204)
Q Consensus        19 ~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~---~---~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~   92 (204)
                      ++++++.++.+..+++.++++.++++++++++|+|+|+..   +   .+++|++++++|+++||+|.+|..+.+|.||+.
T Consensus         6 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~r~~~~~p~~~~~v~~G~~   85 (204)
T 2w7q_A            6 HHHLVPRGSIAIDDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTDAPNEQLLISNGEK   85 (204)
T ss_dssp             -------CCCSSCCHHHHHHHHHHHHTCSEEEEEEEEEEECTTSCCEEEEEEEEEEETTTEEEEEECSSSCEEEEEETTE
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCEEEEEECCCE
T ss_conf             20232035445375689999999984357289999999965889757888999999759989999838870799984988


Q ss_pred             EEEEECCCCCCCCHHHHHH----HHHHHCCHHHHHHHHCCCCCCCCCCE-EEEECCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf             9997133343210111111----23321000121222101132235727-997204666663479999369842999999
Q gi|254780798|r   93 IAVYNAKLDTWSVYPLRYM----AFSVIFSNNQHVIQESIQRVESNNSF-ITIFFKDDFMGNMISVTFDRLSYRLLNWKI  167 (204)
Q Consensus        93 l~~~d~~~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i  167 (204)
                      +|+|+|+.++++..+....    +..++..................... .+...+.........++++.++..++++++
T Consensus        86 ~~~y~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~l~l~p~~~~~~~~~~~id~~~~~p~~~~~  165 (204)
T 2w7q_A           86 VWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGGNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQM  165 (204)
T ss_dssp             EEEEETTTTEEEEECHHHHTTTCGGGGGGSCHHHHTTTEEEEEEEETTEEEEEEEESSSCSSCSEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCCCCEECCHHHHHHCCHHHHHCCCCCHHHHHEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEE
T ss_conf             99986422511001312210005477761663000000133341257538999845787764569999955993899999


Q ss_pred             EECCCCEEEEEEEEEECCCCCCHHHCCC-CCCCCCCC
Q ss_conf             9679987999997432288689655126-85313448
Q gi|254780798|r  168 MDSSRRYSIIKILKYKENTVLDPKVFEI-PYDKIHNI  203 (204)
Q Consensus       168 ~D~~G~~t~i~f~ni~~N~~i~~~~F~f-~~~~~~~~  203 (204)
                      .|..|+.+++.|++++.|+++++++|.| |+++...|
T Consensus       166 ~~~~g~~~~i~f~~~~~n~~i~~~~F~~~~P~~~~vv  202 (204)
T 2w7q_A          166 IDGVGQRTNILFFDVKMNEALDAKQFTFDVPPGVDVI  202 (204)
T ss_dssp             ECTTCCEEEEEEEEEEESCCCCGGGGCCCCCTTCEEE
T ss_pred             EECCCCEEEEEEEEEEECCCCCHHHEEECCCCCCEEE
T ss_conf             9789899999999546089989535889795997575


No 2  
>>1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta barrel, protein transport; 1.65A {Escherichia coli} (A:)
Probab=99.96  E-value=3.9e-28  Score=177.20  Aligned_cols=167  Identities=14%  Similarity=0.213  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHCCCEEEEEEEEEEC------CCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHH
Q ss_conf             1799999986126706999999618------9559999999669869999716641577751205999713334321011
Q gi|254780798|r   34 QSVKKAIEHFLSIQTMQGTFLQEDA------GYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYP  107 (204)
Q Consensus        34 ~~~~~i~~~l~~~~t~~a~F~Q~~~------~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~  107 (204)
                      ++++++.++++++++++|+|+|+..      ..+++|+++++||+++||+|.+|.++.+|.||+.+|+|+|+++|++..+
T Consensus         1 dvl~~~~~~~~~~~s~~a~f~q~~~~~~~~~~~~s~G~~~~~kp~~~r~~~~~P~~~~~v~dg~~~~~y~~~~~~v~~~~   80 (182)
T 1iwl_A            1 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW   80 (182)
T ss_dssp             CHHHHHHHHTTSCSEEEEEEEEEEEC-----CEEEEEEEEEETTTEEEEEECSSSCEEEEEESSEEEEEEGGGTEEEEEE
T ss_pred             CHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEECC
T ss_conf             97899999984667489999999975889726789999999829989999848862299983868999766456324225


Q ss_pred             HHHHHH----HHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             111123----3210001212221011322357279972046666634799993698429999999679987999997432
Q gi|254780798|r  108 LRYMAF----SVIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYK  183 (204)
Q Consensus       108 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~  183 (204)
                      ......    .++.+........ ......+..+.+.++........+.|+++.++. +.++.+.|..|+.+++.|+++ 
T Consensus        81 ~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~l~l~pk~~~~~~~~~~i~~d~~~~-i~~~~i~~~~g~~~~i~f~~~-  157 (182)
T 1iwl_A           81 LKDATGNTPFMLIARNQSSDWQQ-YNIKQNGDDFVLTPKASNGNLKQFTINVGRDGT-IHQFSAVEQDDQRSSYQLKSQ-  157 (182)
T ss_dssp             GGGCCCCSHHHHHHHCCHHHHTT-EEEEEETTEEEEEESSSSCSEEEEEEEECTTCC-EEEEEEEETTCCEEEEEEEEE-
T ss_pred             HHHHHHCCHHHHHCCCHHHHHHH-HHHCCCCEEEEEEECCCCCCCCEEEEEECCCCC-EEEEEEEECCCCEEEEEEEEE-
T ss_conf             35643117678752441555543-001033407999984777663179999988996-899999988989999999800-


Q ss_pred             CCCCCCHHHCCC-CCCCCCCC
Q ss_conf             288689655126-85313448
Q gi|254780798|r  184 ENTVLDPKVFEI-PYDKIHNI  203 (204)
Q Consensus       184 ~N~~i~~~~F~f-~~~~~~~~  203 (204)
                      .|++++++.|+| |+++.++|
T Consensus       158 ~n~~i~~~~F~~~~p~g~~vv  178 (182)
T 1iwl_A          158 QNGAVDAAKFTFTPPQGVTVD  178 (182)
T ss_dssp             EESCCCGGGGSCCCCSSCEEE
T ss_pred             ECCCCCHHHEEECCCCCCEEE
T ss_conf             779999788888795998688


No 3  
>>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} (A:)
Probab=99.81  E-value=7e-19  Score=125.04  Aligned_cols=171  Identities=10%  Similarity=0.037  Sum_probs=131.7

Q ss_pred             HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEC-----CCEEEEEEEEECCCEEEEEECCCC---EEEEEEECEEEEEE
Q ss_conf             4034443101799999986126706999999618-----955999999966986999971664---15777512059997
Q gi|254780798|r   25 NAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDA-----GYVMKGEFFMARPSKFYFKYSSPS---SVSLISDGSNIAVY   96 (204)
Q Consensus        25 ~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~-----~~~~~G~~~~kkP~k~rw~y~~P~---~~~iv~~g~~l~~~   96 (204)
                      +++.+..+++++.++.+.++++++++|+|+|+..     .....|++++++|+++||+|..|.   .+.+++||+.+|.|
T Consensus         2 a~~~~~ta~~il~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~p~~~~~~~~~~dG~~~w~y   81 (229)
T 3buu_A            2 NAKSAVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVXITEPASERGQAILXKGRDLWVF   81 (229)
T ss_dssp             ----CCCHHHHHHHHHHHHSCSSCEEEEEEEEEEETTEECCCEEEEEEEETTTEEEEEEEESTTTTTCEEEEETTEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCEEE
T ss_conf             85234799999999986315788879999999965997579999999972893599999168533580899937651888


Q ss_pred             ECCCCCCCCHHHHHHHHHHHCCHHHH---HHHHC--------CCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf             13334321011111123321000121---22210--------11322357279972046666634799993698429999
Q gi|254780798|r   97 NAKLDTWSVYPLRYMAFSVIFSNNQH---VIQES--------IQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNW  165 (204)
Q Consensus        97 d~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~  165 (204)
                      +|.++++...+..+............   .....        ...+.....+.+.++........+.+++|.+++.+.++
T Consensus        82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~g~~~~vl~~~pk~~~~~~~~~~l~id~~~~~p~k~  161 (229)
T 3buu_A           82 XPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKA  161 (229)
T ss_dssp             CTTCSSCEEECTTSEEETTEEHHHHHCCCSBTTEEEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEE
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEE
T ss_conf             44458338925765657874422000043100233788300251564489999960787777645999998666368999


Q ss_pred             EEEECCCCEE-EEEEEEEECCCCCCHHHCCC
Q ss_conf             9996799879-99997432288689655126
Q gi|254780798|r  166 KIMDSSRRYS-IIKILKYKENTVLDPKVFEI  195 (204)
Q Consensus       166 ~i~D~~G~~t-~i~f~ni~~N~~i~~~~F~f  195 (204)
                      ++.|..|+.+ ++.|++++.|..+....+.+
T Consensus       162 ~~~d~~g~~~~~~~~~~~~~~~~~~~p~~~~  192 (229)
T 3buu_A          162 EFYSVSGRLLKTSRYENFDNILGEXRPTRII  192 (229)
T ss_dssp             EEECTTSCEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCCEEEEEEEEEEEEECCEEEEEEEE
T ss_conf             9981799488999988869988998768999


No 4  
>>2v43_A RSEB, sigma-E factor regulatory protein RSEB; sensor for periplasmic stress, periplasmic, lipoprotein binding; 2.37A {Escherichia coli} PDB: 2v42_A 2p4b_A* (A:1-181)
Probab=99.61  E-value=1e-18  Score=124.16  Aligned_cols=166  Identities=8%  Similarity=0.041  Sum_probs=117.1

Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEEEEEC--C--CEEEEEEEEECCC-EEEEEECCCCEEEEEEECEEEEEEECCCCCCCCH
Q ss_conf             101799999986126706999999618--9--5599999996698-6999971664157775120599971333432101
Q gi|254780798|r   32 KDQSVKKAIEHFLSIQTMQGTFLQEDA--G--YVMKGEFFMARPS-KFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVY  106 (204)
Q Consensus        32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~--~--~~~~G~~~~kkP~-k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~  106 (204)
                      +++.+.++.+.   .++++|+|+|+..  +  ...++.....+|+ .+||+|.+|..+.++.||+.+|+|+|+.+++...
T Consensus         2 a~~il~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dg~~~w~y~p~~~~~~~~   78 (181)
T 2v43_A            2 SGALLQQMNLA---SQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLN   78 (181)
T ss_dssp             ---CHHHHHHH---HHHHHHHSEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEECSSSCCEEEEETTEEEEECTTSCC
T ss_pred             CCCCHHHHHHH---HHHHHHHCCEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEECCCCCEEEEEECCEEEEECCCCCE
T ss_conf             97049999999---998888578359999993991678999999749949999883699840899989999998689842


Q ss_pred             HHHHH--HHHHHCCHHHHHHHHCCC------CCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCE-EEE
Q ss_conf             11111--233210001212221011------322357279972046666634799993698429999999679987-999
Q gi|254780798|r  107 PLRYM--AFSVIFSNNQHVIQESIQ------RVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRY-SII  177 (204)
Q Consensus       107 ~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~-t~i  177 (204)
                      +....  ....+.............      .........+...+.+.....+.++++.+++.+.++++.|..|+. +++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~g~~~~~l~l~pk~~~~~~~~lwid~~~~~p~k~~~~d~~g~~~~~i  158 (181)
T 2v43_A           79 GDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF  158 (181)
T ss_dssp             EEEECSSCTTSSCGGGGCCHHHHTTTEEEEEEEEEEETTEEEEEEEEEETTSCSCEEEEEEETTTCCEEEEEEECTTSCE
T ss_pred             EEEECCCCCCCCCCCCCCCHHHHHHCEEEEECCCCEECCCEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEECCCCCE
T ss_conf             78755545555720034475567426027976874899948899999958887789999997677957999986489969


Q ss_pred             EEEEEECCCCCCHHHCCCCCCCC
Q ss_conf             99743228868965512685313
Q gi|254780798|r  178 KILKYKENTVLDPKVFEIPYDKI  200 (204)
Q Consensus       178 ~f~ni~~N~~i~~~~F~f~~~~~  200 (204)
                      .|++++.|.++++++|+|.+.+|
T Consensus       159 ~~~~~~~n~~i~~~~F~~~~~~~  181 (181)
T 2v43_A          159 RVIAFNVNQDISSSMQTLAKANL  181 (181)
T ss_dssp             EEEEEEEEEEEESSCCHHHHHHH
T ss_pred             EEEEEEEEEEECCCCCHHHHHCC
T ss_conf             99999999983787685464211


No 5  
>>3bk5_A Putative outer membrane lipoprotein-sorting protein; putative outer membrane protein domain, PSI-2; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} (A:)
Probab=99.57  E-value=3.2e-13  Score=93.15  Aligned_cols=169  Identities=11%  Similarity=-0.039  Sum_probs=120.5

Q ss_pred             CCCCCCHHHHHHHHHHHCCCEEEEEEEEEE---CCC-EE-EEEEEE----ECCCEEEEEECCCCE--------EEEEEEC
Q ss_conf             444310179999998612670699999961---895-59-999999----669869999716641--------5777512
Q gi|254780798|r   28 YPITKDQSVKKAIEHFLSIQTMQGTFLQED---AGY-VM-KGEFFM----ARPSKFYFKYSSPSS--------VSLISDG   90 (204)
Q Consensus        28 ~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~---~~~-~~-~G~~~~----kkP~k~rw~y~~P~~--------~~iv~~g   90 (204)
                      .+..+++++.++.+.+...++++|.|.++.   .+. .. .+..+.    .+|+++||++..|..        +.++.||
T Consensus         2 ~~~t~~eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~~~v~dG   81 (237)
T 3bk5_A            2 NAEKGLEIAQERKARDEGWGDSIATXEXILKNAQGESSTRLXRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGA   81 (237)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEEEEEEEEECCC-CCEEEEEEEEEECCTTSCCEEEEEEEESTTTTTCEEEEECCSSSC
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf             46789999999775124878817999999996899899999999997527877558999827741158189998615888


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHC-----CHH-HHHHHHCCC--------CCCCCCCEEEEECCCCCCCCEEEEEEE
Q ss_conf             059997133343210111111233210-----001-212221011--------322357279972046666634799993
Q gi|254780798|r   91 SNIAVYNAKLDTWSVYPLRYMAFSVIF-----SNN-QHVIQESIQ--------RVESNNSFITIFFKDDFMGNMISVTFD  156 (204)
Q Consensus        91 ~~l~~~d~~~~q~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~l~f~  156 (204)
                      +.+|.|+|..+++.+.+.......+..     ... .........        .+.....+.+.++........+.+++|
T Consensus        82 ~~~w~y~p~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~~~~g~e~v~g~~~y~l~l~pk~~~~~~~~~~lwvd  161 (237)
T 3bk5_A           82 DDQWLYLPALKRVKRISSRNKSGPFXGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLD  161 (237)
T ss_dssp             CEEEEEETTTTEEEECCGGGTTSBSTTSSCBGGGGSCCCGGGEEEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEE
T ss_pred             CEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCEECCEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf             33798736677069857423567643453232443024300010010143000881499999616877776306999999


Q ss_pred             CCCCEEEEEEEEECCC--------------------------------CEEEEEEEEEECCCCCCHHHCCCC
Q ss_conf             6984299999996799--------------------------------879999974322886896551268
Q gi|254780798|r  157 RLSYRLLNWKIMDSSR--------------------------------RYSIIKILKYKENTVLDPKVFEIP  196 (204)
Q Consensus       157 ~~~~~l~~~~i~D~~G--------------------------------~~t~i~f~ni~~N~~i~~~~F~f~  196 (204)
                      .+++.+.+++..|..|                                ..|++.+++++.|++|+++.|.-+
T Consensus       162 ~~t~~p~k~~~~~~~g~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~g~~t~~~~~~i~~n~~i~~~~Fs~~  233 (237)
T 3bk5_A          162 KAHYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTXAXTNHQTGKSTELNTSDLRFQTGLEENDFNKN  233 (237)
T ss_dssp             TTTCCEEEEEEEETTSCEEEEEEEEEEEEETTTEEEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGGCGG
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHCCHH
T ss_conf             888768777777069968899991441320596542189999907899989999997882899894888986


No 6  
>>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:1-94,A:210-336)
Probab=84.69  E-value=0.9  Score=22.95  Aligned_cols=70  Identities=13%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCEEEEEEEEEECCCEEEEEEEEECCCEEEEEEC
Q ss_conf             1478899999999999999999740344431017999999861--26706999999618955999999966986999971
Q gi|254780798|r    2 AFLLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL--SIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYS   79 (204)
Q Consensus         2 ~~~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~--~~~t~~a~F~Q~~~~~~~~G~~~~kkP~k~rw~y~   79 (204)
                      +-||||+++.+++++++++++....+.|........++.+...  ++.          ..-.-+|-+-...-|++.++|.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~p~~~~~~~~~~~~~----------~~~~p~~~~~~~~~gq~ly~~~   88 (221)
T 3hun_A           19 SHMAMKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLS----------AAYEPTSAVNVSQTGQLLYQYN   88 (221)
T ss_dssp             ----------------------------CCCSSCHHHHHHHTTCTTCC----------GGGCCSEEEEEETTSBEEEEES
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------CCCCCEEEEEECCCCCCHHEEC
T ss_conf             410199999999999999997316766403678863134443667777----------5557617999999992812258


Q ss_pred             CC
Q ss_conf             66
Q gi|254780798|r   80 SP   81 (204)
Q Consensus        80 ~P   81 (204)
                      .-
T Consensus        89 ~~   90 (221)
T 3hun_A           89 ID   90 (221)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             19


No 7  
>>2byo_A Lipoprotein LPPX; lipid transport, membrane, palmitate; HET: HXA LNL; 2.15A {Mycobacterium tuberculosis} (A:)
Probab=65.06  E-value=8.3  Score=17.51  Aligned_cols=158  Identities=10%  Similarity=-0.063  Sum_probs=85.5

Q ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEEEEEC----CCEEEEEEEEE-CCCEEEEEEC--CCCEEEEEEECEEEEEEECCCCC
Q ss_conf             43101799999986126706999999618----95599999996-6986999971--66415777512059997133343
Q gi|254780798|r   30 ITKDQSVKKAIEHFLSIQTMQGTFLQEDA----GYVMKGEFFMA-RPSKFYFKYS--SPSSVSLISDGSNIAVYNAKLDT  102 (204)
Q Consensus        30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~----~~~~~G~~~~k-kP~k~rw~y~--~P~~~~iv~~g~~l~~~d~~~~q  102 (204)
                      ..+.+++.+..+.+.++++++.+.+-+..    +...++...+. +|++++..-+  .-.+..++.-|..+|++.++-.+
T Consensus        22 ~~~~~il~~a~~a~~~~~S~~~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~vg~~~Y~~~~~~w~  101 (207)
T 2byo_A           22 PALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWS  101 (207)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEEEEEECCCSSTTEEEEEEEEETTTTEEEEEEEETTEEEEEEEEETTEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEEEECCEEEECCCCCHH
T ss_conf             34799999999987426649999998055678754036888766077324736873577867999999888980885431


Q ss_pred             CCCHHHHH------HHHHHHCCHHHHHHHHCCCCCCCCC--CEEEE----EC-------CCCCCCCEEEEEEECCCCE-E
Q ss_conf             21011111------1233210001212221011322357--27997----20-------4666663479999369842-9
Q gi|254780798|r  103 WSVYPLRY------MAFSVIFSNNQHVIQESIQRVESNN--SFITI----FF-------KDDFMGNMISVTFDRLSYR-L  162 (204)
Q Consensus       103 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~-------~~~~~~~~i~l~f~~~~~~-l  162 (204)
                      ..-..-..      .|...+..................+  ..+..    ..       ..........++++.++.. .
T Consensus       102 ~~~~~~~~~~~~~~dp~~~~~~~l~~~~~~~~~g~etidG~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~wVd~~g~~~~  181 (207)
T 2byo_A          102 NLGSISELSTSRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHL  181 (207)
T ss_dssp             EEEEHHHHHHHTC-----CCCCCSTTCEEEEEEEEEEETTEEEEEEEEEECHHHHHHHCTTCCSCEEEEEEEESSSSCCE
T ss_pred             HCCCCCCCCHHHHCCHHHHHHHHHHCCCCCEECCCEEECCEEEEEEEEEECHHHHHHHCCCCCCCCEEEEEECCCCCEEE
T ss_conf             06744457874603956779999750688413362476887389999998789987635256787218999917998899


Q ss_pred             EEEEEEECCCCEEEEEEEEEECCCCC
Q ss_conf             99999967998799999743228868
Q gi|254780798|r  163 LNWKIMDSSRRYSIIKILKYKENTVL  188 (204)
Q Consensus       163 ~~~~i~D~~G~~t~i~f~ni~~N~~i  188 (204)
                      .++.+. ..+...+++|++.-...+|
T Consensus       182 ~~~~~~-~~~~~~~~~~sd~g~pv~I  206 (207)
T 2byo_A          182 VRASID-LGSGSIQLTQSKWNEPVNV  206 (207)
T ss_dssp             EEEEEE-CSSEEEEEEEESTTCCCCC
T ss_pred             EEEEEC-CCCCCEEEEEEECCCCCCC
T ss_conf             999943-6897489998318982454


No 8  
>>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} (A:)
Probab=45.93  E-value=13  Score=16.43  Aligned_cols=41  Identities=7%  Similarity=-0.090  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             78899999999999999999740344431017999999861
Q gi|254780798|r    4 LLYKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFL   44 (204)
Q Consensus         4 ~~mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~   44 (204)
                      |.||+.+.+++++++++..++....+......+..+.+...
T Consensus         1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   41 (294)
T 3dw0_A            1 MSLYRRLVLLSCLSWPLAGFSATALTNLVAEPFAKLEQDFG   41 (294)
T ss_dssp             -----------------------------CHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             92589999999999998743032432124799999998629


No 9  
>>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000} (A:1-117,A:174-211)
Probab=45.15  E-value=8.3  Score=17.51  Aligned_cols=18  Identities=6%  Similarity=0.032  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999
Q gi|254780798|r    6 YKSVIGVVILFFYSAIFP   23 (204)
Q Consensus         6 mk~i~~~~i~~~~~~~~~   23 (204)
                      ||+++..+++++++++..
T Consensus         2 Mkr~~~~l~~~~ll~~~~   19 (155)
T 2qgu_A            2 FKKLLHSLVAGLTFVAAV   19 (155)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             589999999999999998


No 10 
>>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin digestion, mechanism; 1.90A {Proteus vulgaris} (A:1-241)
Probab=37.18  E-value=9.4  Score=17.20  Aligned_cols=56  Identities=18%  Similarity=0.141  Sum_probs=31.2

Q ss_pred             EEEEEEEEEECC--CE-EEE-EEEEEC------CCEEEEEECCCCEEEEEE-------------------ECEEEEEEEC
Q ss_conf             069999996189--55-999-999966------986999971664157775-------------------1205999713
Q gi|254780798|r   48 TMQGTFLQEDAG--YV-MKG-EFFMAR------PSKFYFKYSSPSSVSLIS-------------------DGSNIAVYNA   98 (204)
Q Consensus        48 t~~a~F~Q~~~~--~~-~~G-~~~~kk------P~k~rw~y~~P~~~~iv~-------------------~g~~l~~~d~   98 (204)
                      +---+|++....  -+ ++| ++.+.-      -.-++|++++.....|-.                   .|-.+|+|++
T Consensus        39 ~~i~~FE~~~~~a~~ts~~gs~lsiS~~hyK~G~qSL~W~w~~gs~Lti~~~~~~~~~~~~~~~~g~~~~~~~~~WIYNE  118 (241)
T 1hn0_A           39 SEIYHFAQNNPLADFSSDKNSILTLSDKRSIMGNQSLLWKWKGGSSFTLHKKLIVPTDKEASKAWGRSSTPVFSFWLYNE  118 (241)
T ss_dssp             CEEECSCSSSTTTTEECCTTEEEEEESSSCSSSSCEEEEEEETTCEEEEECCBCCCCHHHHHHHHTSSEEEEEEEEEEES
T ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEECCCHHCCCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCCEEEEEEECC
T ss_conf             87777650696210245776347841410002673106773388624764225314765676652557885178884047


Q ss_pred             CCCCC
Q ss_conf             33432
Q gi|254780798|r   99 KLDTW  103 (204)
Q Consensus        99 ~~~q~  103 (204)
                      .--..
T Consensus       119 ~p~d~  123 (241)
T 1hn0_A          119 KPIDG  123 (241)
T ss_dssp             SCCSS
T ss_pred             CCCCC
T ss_conf             77573


No 11 
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295)
Probab=34.37  E-value=5.3  Score=18.61  Aligned_cols=23  Identities=0%  Similarity=-0.023  Sum_probs=13.9

Q ss_pred             HHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             99999986126706999999618
Q gi|254780798|r   36 VKKAIEHFLSIQTMQGTFLQEDA   58 (204)
Q Consensus        36 ~~~i~~~l~~~~t~~a~F~Q~~~   58 (204)
                      .-...+.+..=.++.-++++-++
T Consensus        52 ~~~~v~~~~kk~Gi~Ve~v~f~d   74 (183)
T 1p99_A           52 AWEKVKELAKKDDIDVEIKHFSD   74 (183)
T ss_dssp             HHHHHHHHHGGGTCCEEEEECSS
T ss_pred             HHHHHHHHHHHCCCEEEEEEECC
T ss_conf             99999999997498799998378


No 12 
>>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:)
Probab=32.86  E-value=11  Score=16.91  Aligned_cols=32  Identities=6%  Similarity=-0.122  Sum_probs=16.4

Q ss_pred             EEEEEEEEC--CCEEEEEECCCCEEEEEEECEEE
Q ss_conf             999999966--98699997166415777512059
Q gi|254780798|r   62 MKGEFFMAR--PSKFYFKYSSPSSVSLISDGSNI   93 (204)
Q Consensus        62 ~~G~~~~kk--P~k~rw~y~~P~~~~iv~~g~~l   93 (204)
                      ..|.|.++.  ++.+...|..-..+.+.......
T Consensus        73 ~~G~f~l~~~~~~~l~~s~~g~~~~~~~~~~~~~  106 (774)
T 1kmo_A           73 LHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEP  106 (774)
T ss_dssp             ----------------------------------
T ss_pred             CCCCCCHHHHHHHHHCCCCCEEEEECCCEEEEEE
T ss_conf             6673089999999974798189992797599987


No 13 
>>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} (A:93-212)
Probab=27.82  E-value=5.5  Score=18.52  Aligned_cols=68  Identities=7%  Similarity=-0.015  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEECCCCEEEEEEECEEEEEEE
Q ss_conf             4310179999998612670699999961895599999996-6986999971664157775120599971
Q gi|254780798|r   30 ITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKYSSPSSVSLISDGSNIAVYN   97 (204)
Q Consensus        30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y~~P~~~~iv~~g~~l~~~d   97 (204)
                      .......+.|++.+.|.+.|.++|++.-.+...+|-+++- .+++++-.-+.-...-+..+..-+...|
T Consensus         3 ~P~~~L~~~I~~~FGS~e~fk~~F~~aA~~~~GsGW~wl~~~~~~L~i~~t~n~~~p~~~~~~PiL~iD   71 (120)
T 1coj_A            3 EPSEALKKKIEEDIGGLDACTNELKAAAMAFRGWAILGLDIFSGRLVVNGLDAHNVYNLTGLIPLIVID   71 (120)
T ss_dssp             CCCHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSEEEEEEETTTTEEEEEEESBTTBSCCTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf             355999999998838999999999865114457437886169996489755765666522340368754


No 14 
>>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:1-79)
Probab=27.45  E-value=17  Score=15.70  Aligned_cols=25  Identities=8%  Similarity=0.118  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999999997403444
Q gi|254780798|r    6 YKSVIGVVILFFYSAIFPFNAAYPI   30 (204)
Q Consensus         6 mk~i~~~~i~~~~~~~~~~~a~~~~   30 (204)
                      ||+.+..++++++++.++..|.+..
T Consensus         1 Mrrl~aliL~~~l~~~~~p~A~Ad~   25 (79)
T 1jb0_F            1 MRRFLALLLVLTLWLGFTPLASADV   25 (79)
T ss_dssp             -----------------------CG
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             9279999999999983896301244


No 15 
>>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:)
Probab=26.94  E-value=16  Score=15.97  Aligned_cols=53  Identities=4%  Similarity=-0.071  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             4788999999999999999997403444--------3101799999986126706999999
Q gi|254780798|r    3 FLLYKSVIGVVILFFYSAIFPFNAAYPI--------TKDQSVKKAIEHFLSIQTMQGTFLQ   55 (204)
Q Consensus         3 ~~~mk~i~~~~i~~~~~~~~~~~a~~~~--------~~~~~~~~i~~~l~~~~t~~a~F~Q   55 (204)
                      |=|||+++.++++++++++.++.+....        ........+...+.....-.-.+-+
T Consensus         1 M~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~   61 (396)
T 2vx5_A            1 MSEKPAESAAAVADSATTTAPQSGKPETALPALIDTQATAETRALYRNLAKLRYKHLLFGH   61 (396)
T ss_dssp             -----------------------------CCCCSCTTCCHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9966256677776034434677899988877147998489999999999986289889702


No 16 
>>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} (A:1-225)
Probab=24.97  E-value=18  Score=15.66  Aligned_cols=21  Identities=10%  Similarity=0.146  Sum_probs=11.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             914788999999999999999
Q gi|254780798|r    1 MAFLLYKSVIGVVILFFYSAI   21 (204)
Q Consensus         1 ~~~~~mk~i~~~~i~~~~~~~   21 (204)
                      |+|-.||+.+.+++++++.+.
T Consensus         1 m~~~~m~~~~~l~~~l~~~~~   21 (225)
T 2vzs_A            1 VSFRQKRTRIPLLAMTVTALA   21 (225)
T ss_dssp             ---------------------
T ss_pred             CCCCCCCCEEEEHHHHHHHHH
T ss_conf             975433322003699999999


No 17 
>>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:53-101)
Probab=24.91  E-value=40  Score=13.64  Aligned_cols=15  Identities=13%  Similarity=0.023  Sum_probs=9.7

Q ss_pred             ECEEEEEEECCCCCC
Q ss_conf             120599971333432
Q gi|254780798|r   89 DGSNIAVYNAKLDTW  103 (204)
Q Consensus        89 ~g~~l~~~d~~~~q~  103 (204)
                      .|+.+|.|||+....
T Consensus        31 TG~~~W~ydp~~~~~   45 (49)
T 1w6s_A           31 PGTILWQDKPKQNPA   45 (49)
T ss_dssp             TTSEEEEECCCCCGG
T ss_pred             CCCEEEECCCCCCCC
T ss_conf             986788624878865


No 18 
>>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} (A:105-217)
Probab=24.25  E-value=5  Score=18.73  Aligned_cols=67  Identities=7%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEECCCCEEEEEEECEEEEEEE
Q ss_conf             310179999998612670699999961895599999996-6986999971664157775120599971
Q gi|254780798|r   31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKYSSPSSVSLISDGSNIAVYN   97 (204)
Q Consensus        31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y~~P~~~~iv~~g~~l~~~d   97 (204)
                      ......+.|++.+.|.+.|.++|...-.+...+|-.++- .+++++.....-...-+..+..-+...|
T Consensus         3 P~~~L~~aI~~~FGS~e~fk~~f~~~a~~~~GsGW~wL~~~~~~L~i~~t~n~~~p~~~~~~Pil~iD   70 (113)
T 1xre_A            3 PNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGEELSVMSTPNQDTPLQEGKIPLLVID   70 (113)
T ss_dssp             CCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEEETTEEEEEEEETTCCGGGGTCEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf             84899999998549999999999887650356418999814973567740476888778976899875


No 19 
>>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A (A:94-202)
Probab=24.10  E-value=3.7  Score=19.48  Aligned_cols=67  Identities=13%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEE-ECCCEEEEEECCCCEEEEEEECEEEEEEE
Q ss_conf             31017999999861267069999996189559999999-66986999971664157775120599971
Q gi|254780798|r   31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFM-ARPSKFYFKYSSPSSVSLISDGSNIAVYN   97 (204)
Q Consensus        31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~-kkP~k~rw~y~~P~~~~iv~~g~~l~~~d   97 (204)
                      ......+.|++.+.|.+.|.++|++.-.+...+|-.++ ..+++++.....-...-++.+..-+...|
T Consensus         4 p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~wL~~~~~~l~i~~~~~~~~p~~~~~~pll~iD   71 (109)
T 2rcv_A            4 PTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLD   71 (109)
T ss_dssp             CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEEEEETTCCGGGGTCEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf             98699999999839999999998774202466548999832880589740376787667970289850


No 20 
>>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Flavobacterium heparinium} (A:1-474)
Probab=23.54  E-value=34  Score=14.07  Aligned_cols=43  Identities=7%  Similarity=-0.110  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             8999999999999999997403444310179999998612670
Q gi|254780798|r    6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQT   48 (204)
Q Consensus         6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t   48 (204)
                      ||+++.++++.++++......+........-..|++.++..+.
T Consensus         1 Mk~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~tiq~Ai~~a~~   43 (474)
T 1dbg_A            1 MKMLNKLAGYLLPIMVLLNVAPCLGQVVASNETLYQVVKEVKP   43 (474)
T ss_dssp             -------------------------CEECSHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHCCC
T ss_conf             9069999999999999860120100550883899999971899


No 21 
>>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint center for structural genomics, JCSG; 2.28A {Desulfovibrio desulfuricans subsp} (A:1-233,A:413-496)
Probab=22.31  E-value=22  Score=15.08  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             EEEEEEEECCCEEEEEECCCCEEEEEEECEE
Q ss_conf             9999999669869999716641577751205
Q gi|254780798|r   62 MKGEFFMARPSKFYFKYSSPSSVSLISDGSN   92 (204)
Q Consensus        62 ~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~   92 (204)
                      .-|.+|++.|+.+-+.|.-|.+...-.+|..
T Consensus       211 ~pG~vWir~~~~feF~Y~y~~~vfa~~dge~  241 (317)
T 3c8v_A          211 EPGQIWIKSGDELEFHYSFDKAIFAKVDGEV  241 (317)
T ss_dssp             CTTEEEEECTTSEEEEEECCHHHHTTCEEEE
T ss_pred             CCCEEEECCCEEEEEEEEECCCECCEECCCE
T ss_conf             5877997488068510487344054051737


No 22 
>>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} (A:118-226)
Probab=20.50  E-value=4.6  Score=18.98  Aligned_cols=65  Identities=9%  Similarity=0.114  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEEECCCCEEEEEEECEEEEE
Q ss_conf             310179999998612670699999961895599999996-69869999716641577751205999
Q gi|254780798|r   31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFKYSSPSSVSLISDGSNIAV   95 (204)
Q Consensus        31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~y~~P~~~~iv~~g~~l~~   95 (204)
                      ......+.|++.+.|.+.|..+|++.-.+...+|-+++- .+++++..-..-...-+..+..-+..
T Consensus         3 P~~~L~~~I~~~FGS~d~fk~~f~~~A~~~~GsGW~wl~~~~~~L~i~~~~n~~~~~~~~~~Pll~   68 (109)
T 2cw2_A            3 PTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVWLIADDGKLKIVQGHDAGNPIRESKTPLMN   68 (109)
T ss_dssp             CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEESSSCEEEEEEETTCCGGGTTCEEEEE
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCEEEE
T ss_conf             985799999998522999999999987067887479998567677642145668985457822899


Done!