HHsearch results for GI: 254780798 and protein with PDBid: 3bk5_A
>3bk5_A Putative outer membrane lipoprotein-sorting protein; putative outer membrane protein domain, PSI-2; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.81 E-value=0.0013 Score=38.16 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEE--E-ECCCEEEEEEEEE---CC---CEEEEEECCCCE---EEEEE-----ECEE
Q ss_conf 43101799999986126706999999--6-1895599999996---69---869999716641---57775-----1205
Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQ--E-DAGYVMKGEFFMA---RP---SKFYFKYSSPSS---VSLIS-----DGSN 92 (204)
Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q--~-~~~~~~~G~~~~k---kP---~k~rw~y~~P~~---~~iv~-----~g~~ 92 (204)
....++++++.+.-.+.++.+|.-.= + ..|...+=.+-++ .+ .+....+..|.. +.+.. .++.
T Consensus 4 ~~g~eIa~~~~~~~~g~~~~~~~~~M~l~~~~g~~~~R~~~~~~~~~~~~~~ksli~f~~P~~~kGt~~L~~~~~~~~dd 83 (237)
T 3bk5_A 4 EKGLEIAQERKARDEGWGDSIATMEMILKNAQGESSTRLMRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGADD 83 (237)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEEEEECCC-CCEEEEEEEEEECCTTSCCEEEEEEEESTTTTTCEEEEECCSSSCCE
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEEECCHHCCCCEEEEEECCCCCCC
T ss_conf 67999999977512487782699999999589989999999999980799837999993651105948998644689861
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCHHHHH--------HHHC------CCCCCCCCCEEEEECCCCCCCCEEEEEEECC
Q ss_conf 9997133343210111111233210001212--------2210------1132235727997204666663479999369
Q gi|254780798|r 93 IAVYNAKLDTWSVYPLRYMAFSVIFSNNQHV--------IQES------IQRVESNNSFITIFFKDDFMGNMISVTFDRL 158 (204)
Q Consensus 93 l~~~d~~~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~ 158 (204)
.|.|.|.++.+-+.+...-...+........ .... ...+.........++........+.++++.+
T Consensus 84 ~WlYlP~~~rv~RIs~s~k~~sfmGSDfsyeDl~~~~~~~~~~~l~~~~~~~g~~~~vle~~pk~~~~~Y~k~~~wIdk~ 163 (237)
T 3bk5_A 84 QWLYLPALKRVKRISSRNKSGPFMGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKA 163 (237)
T ss_dssp EEEEETTTTEEEECCGGGTTSBSTTSSCBGGGGSCCCGGGEEEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEETT
T ss_pred EEEECCCCCCEEECCCCCCCCCCCCCEEEHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEECC
T ss_conf 58984778834985830146873344112134100320001122202211288069999952589877416999999977
Q ss_pred CCEEEEEEEEECC--------------------------------CCEEEEEEEEEECCCCCCHHHCCCC
Q ss_conf 8429999999679--------------------------------9879999974322886896551268
Q gi|254780798|r 159 SYRLLNWKIMDSS--------------------------------RRYSIIKILKYKENTVLDPKVFEIP 196 (204)
Q Consensus 159 ~~~l~~~~i~D~~--------------------------------G~~t~i~f~ni~~N~~i~~~~F~f~ 196 (204)
++.+.+.+..|.. |..|.+.+.++++|..|++++|.-.
T Consensus 164 ~~~p~k~e~yd~~G~l~K~~~~~~~~~~~~~~~~~~~~~m~~~~~g~~T~l~~~~i~~~~~l~d~~Ft~~ 233 (237)
T 3bk5_A 164 HYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTMAMTNHQTGKSTELNTSDLRFQTGLEENDFNKN 233 (237)
T ss_dssp TCCEEEEEEEETTSCEEEEEEEEEEEEETTTEEEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGGCGG
T ss_pred CCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHCCHH
T ss_conf 7679999999279969999994541320596443499999917889889999986781899894888987