RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780798|ref|YP_003065211.1| possible lolA type protein
[Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>gnl|CDD|178807 PRK00031, lolA, lipoprotein chaperone; Reviewed.
          Length = 195

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 31/142 (21%)

Query: 45  SIQTMQGTFLQ----EDAGYVM--KGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNA 98
            +++    F Q         V    G  ++ RP+ F + Y+ P    ++SDG  + +Y+ 
Sbjct: 27  KVKSFSADFTQTVTSGSGKVVQEGSGTLWVKRPNLFRWHYTKPDEQLIVSDGKTLWIYDP 86

Query: 99  KLDTWSVYPL----RYMAFSVIFSNNQ------HVIQESIQ------RVESNNSFITIFF 142
            L+  ++  L        F+++  NN        V Q+           ++N    TI F
Sbjct: 87  DLEQVTITWLKDATGNTPFALLTRNNSSDWKQYDVKQKGDTFTLTPKAKDTNFKQFTIGF 146

Query: 143 KD---------DFMGNMISVTF 155
           ++         D  G    +TF
Sbjct: 147 RNGTLASFSLVDQDGQRTLITF 168


>gnl|CDD|129638 TIGR00547, lolA, periplasmic chaperone LolA.  This protein, LolA,
          is known so far only in the gamma and beta subdivisions
          of the Proteobacteria. The E. coli major outer
          lipoprotein (Lpp) of E. coli is released from the inner
          membrane as a complex with this chaperone in an
          energy-requiring process, and is then delivered to LolB
          for insertion into the outer membrane. LolA is involved
          in the delivery of lipoproteins generally, rather than
          just Lpp, and is an essential protein in E. coli,
          unlike Lpp itself.
          Length = 204

 Score = 27.3 bits (60), Expect = 2.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 63 KGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYN 97
          +G+  + RP+ F  +   P    +ISDG  +  Y+
Sbjct: 58 QGDLQIKRPNLFNMEMKQPDESIIISDGKTLWFYD 92


>gnl|CDD|182110 PRK09849, PRK09849, putative oxidoreductase; Provisional.
          Length = 702

 Score = 27.3 bits (61), Expect = 3.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 109 RYMAFSVIFSNNQHVIQESIQ 129
            YM   +I +NN HV+  + Q
Sbjct: 223 DYMLTELIGANNNHVVPSTPQ 243


>gnl|CDD|179305 PRK01581, speE, spermidine synthase; Validated.
          Length = 374

 Score = 27.2 bits (60), Expect = 3.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 168 MDSSRRYSIIKILK---YKEN--TVLDPKVFEIPYDKIHNI 203
           M   R+ S IKI +   YK++  + LD   FE+    + N 
Sbjct: 1   MPKHRKQSKIKIYRITSYKKDKRSELDSNKFELEQQLVENK 41


>gnl|CDD|129764 TIGR00681, kdpC, K+-transporting ATPase, C subunit.  This chain has
           a single predicted transmembrane region near the amino
           end. It is part of a K+-transport ATPase that contains
           two other membrane-bound subunits, KdpA and KdpB, and a
           small subunit KdpF. KdpA is the K+-translocating
           subunit, KdpB the ATP-hydrolyzing subunit. During
           assembly of the complex, KdpA and KdpC bind to each
           other. This interaction is thought to stabilize the
           complex [PubMed:9858692]. Data indicates that KdpC might
           connect the KdpA, the K+-transporting subunit, to KdpB,
           the ATP-hydrolyzing (energy providing) subunit
           [PubMed:9858692].
          Length = 187

 Score = 26.8 bits (59), Expect = 4.3
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 66  FFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLD 101
           +F +RPS   +           S GSN+A  N  L 
Sbjct: 63  YFHSRPSAINYSEYPTG----ASGGSNLAPSNPDLL 94


>gnl|CDD|185664 PTZ00486, PTZ00486, apyrase Superfamily; Provisional.
          Length = 352

 Score = 26.5 bits (59), Expect = 4.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 150 MISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFEI 195
           +I    D  + R++     D  R +S IK L   EN ++  K  E+
Sbjct: 272 IIICDEDFQNPRVIKDPQYDPERGFSSIKFLPGNENIIVALKSVEV 317


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,262,805
Number of extensions: 193855
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 16
Length of query: 204
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,071,361
Effective search space: 468206515
Effective search space used: 468206515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.3 bits)