RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780798|ref|YP_003065211.1| possible lolA type protein
[Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed
           beta barrel, protein transport; 1.65A {Escherichia coli}
           (A:)
          Length = 182

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 25/170 (14%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 35  SVKKAIEHFLSIQTMQGTFLQE------DAGYVMKGEFFMARPSKFYFKYSSPSSVSLIS 88
           +          + +   +F Q+       A    +G+ ++ RP+ F +  + P    L+S
Sbjct: 2   AASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVS 61

Query: 89  DGSNIAVYNAKLDTWSVYPLRY---MAFSVIFSNNQHVIQESIQRVESNNSFITIFFKDD 145
           DG  +  YN  ++  +   L+        ++ + NQ    +     ++ + F+      +
Sbjct: 62  DGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASN 121

Query: 146 FMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFEI 195
                 ++   R    +  +  ++   + S    LK ++N  +D   F  
Sbjct: 122 GNLKQFTINVGRDGT-IHQFSAVEQDDQRSSY-QLKSQQNGAVDAAKFTF 169


>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2,
           protein structure initiative, nysgxrc; 2.16A
           {Enterococcus faecalis V583} (A:59-140)
          Length = 82

 Score = 25.8 bits (57), Expect = 4.6
 Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 161 RLLNWKIMDSSRRYSIIKILKYKENTV 187
           + L+  ++ S     I ++L Y++ T 
Sbjct: 57  KYLS--LLSSEEAGEIKELLHYEDETA 81


>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG,
           LPR118, structural genomics, PSI-2, protein structure
           initiative; 1.96A {Lactobacillus plantarum}
           (A:1-88,A:287-347)
          Length = 149

 Score = 25.2 bits (54), Expect = 5.9
 Identities = 7/84 (8%), Positives = 18/84 (21%), Gaps = 6/84 (7%)

Query: 53  FLQEDAGYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYPLRYMA 112
           +  +                        P    L    + + V N   D  ++Y     +
Sbjct: 68  WQIDGQTAHKLNTVVA------PGTPPFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS 121

Query: 113 FSVIFSNNQHVIQESIQRVESNNS 136
             +        + E +      + 
Sbjct: 122 GKLSLLQKDVTVPEGVCVRFLEHH 145


>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A
           {Homo sapiens} (A:)
          Length = 123

 Score = 25.1 bits (55), Expect = 7.6
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 172 RRYSIIKILKYKENTVLDPKVFEI 195
               + +I ++  NT+ D +   I
Sbjct: 75  SSNCVCQIHRFIVNTLKDGRRVVI 98


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,481,651
Number of extensions: 61883
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 13
Length of query: 204
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 120
Effective length of database: 2,116,429
Effective search space: 253971480
Effective search space used: 253971480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)