RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62] (204 letters) >2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, periplasm, chaperone; 1.88A {Pseudomonas aeruginosa} Length = 204 Score = 72.1 bits (176), Expect = 7e-14 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 11/181 (6%) Query: 26 AAYPITKDQSVKKAIEHFLSIQTMQGTFLQE------DAGYVMKGEFFMARPSKFYFKYS 79 + I +V++ QT+ F Q G+ + RP F + Sbjct: 13 GSIAIDDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTD 72 Query: 80 SPSSVSLISDGSNIAVYNAKLDTWSVYPLRYMAFSVIF-----SNNQHVIQESIQRVESN 134 +P+ LIS+G + +Y+ L+ ++ L ++ +I E Sbjct: 73 APNEQLLISNGEKVWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGG 132 Query: 135 NSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFE 194 N + ++ S ++ + +++D + + I K N LD K F Sbjct: 133 NVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQMIDGVGQRTNILFFDVKMNEALDAKQFT 192 Query: 195 I 195 Sbjct: 193 F 193 >1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta barrel, protein transport; 1.65A {Escherichia coli} SCOP: b.125.1.1 PDB: 1ua8_A 2zpd_A 2zpc_A Length = 182 Score = 62.9 bits (152), Expect = 4e-11 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 11/168 (6%) Query: 36 VKKAIEHFLSIQTMQGTFLQE------DAGYVMKGEFFMARPSKFYFKYSSPSSVSLISD 89 + + +F Q+ A +G+ ++ RP+ F + + P L+SD Sbjct: 3 ASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSD 62 Query: 90 GSNIAVYNAKLDTWSVYPLRY---MAFSVIFSNNQHVIQESIQRVESNNSFITIFFKDDF 146 G + YN ++ + L+ ++ + NQ + ++ + F+ + Sbjct: 63 GKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNG 122 Query: 147 MGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFE 194 ++ R + + ++ + S LK ++N +D F Sbjct: 123 NLKQFTINVGR-DGTIHQFSAVEQDDQRSSY-QLKSQQNGAVDAAKFT 168 >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Score = 27.7 bits (61), Expect = 1.9 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 8/48 (16%) Query: 33 DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSS 80 ++ ++ + L Q G + QE+ + G F Y+S Sbjct: 667 IEAQERGVRCLLEKQLPNGDWPQEN----IAGVF----NKSCAISYTS 706 >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Score = 26.6 bits (58), Expect = 4.6 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 7/54 (12%) Query: 27 AYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSS 80 A + ++ ++ +++ + Q G + + G F P FY Y+ Sbjct: 565 AGGRAESEAARRGVQYLVETQRPDGGWDEPY----YTGTGF---PGDFYLGYTM 611 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 4.7 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 40/70 (57%) Query: 32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSSPSSVSLISDGS 91 + Q++KK +Q + K Y S+P+ Sbjct: 18 EKQALKK----------LQASL-------------------KLYADDSAPA--------- 39 Query: 92 NIAVYNAKLD 101 +A+ A ++ Sbjct: 40 -LAI-KATME 47 >2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A Length = 123 Score = 25.5 bits (56), Expect = 8.5 Identities = 5/24 (20%), Positives = 11/24 (45%) Query: 172 RRYSIIKILKYKENTVLDPKVFEI 195 + +I ++ NT+ D + I Sbjct: 75 SSNCVCQIHRFIVNTLKDGRRVVI 98 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.138 0.401 Gapped Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,708,861 Number of extensions: 73835 Number of successful extensions: 270 Number of sequences better than 10.0: 1 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 14 Length of query: 204 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 116 Effective length of database: 3,559,758 Effective search space: 412931928 Effective search space used: 412931928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (24.7 bits)