HHsearch alignment for GI: 254780799 and conserved domain: COG0433
>COG0433 HerA helicase [Replication, recombination, and repair].
Probab=97.96 E-value=0.00039 Score=50.59 Aligned_cols=71 Identities=25% Similarity=0.465 Sum_probs=55.1
Q ss_pred EEEEHHHHHHHHHHCCC----HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCC
Q ss_conf 87763446888873210----05889999998664142379999657775355435541102515876458664212338
Q gi|254780799|r 592 IVVVIDEMADLMMVARK----DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILG 667 (806)
Q Consensus 592 ivviiDElaDlmm~~~~----~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild 667 (806)
T Consensus 393 ~~~iieea~~~---~p~~~~~~~~~~~~~iar~gRk~~v~l~~~tQrps--~l~~~v~~~~~tkii~r~~~~~d~~~~~~ 467 (520)
T COG0433 393 LLIVIEEAHNF---APSSRKAPVKDIIERIAREGRKFGVGLVLATQRPS--DLDDLVLSQANTKIILRLVEPTDQKYISR 467 (520)
T ss_pred CCEEHHHHHHH---CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHH--HCCHHHHHCCCHHHHHCCCCCHHHHHHHH
T ss_conf 41140777763---87554214689999999860723541357886767--63078986103497740578223666565