HHsearch alignment for GI: 254780799 and conserved domain: COG0433

>COG0433 HerA helicase [Replication, recombination, and repair].
Probab=97.96  E-value=0.00039  Score=50.59  Aligned_cols=71  Identities=25%  Similarity=0.465  Sum_probs=55.1

Q ss_pred             EEEEHHHHHHHHHHCCC----HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCC
Q ss_conf             87763446888873210----05889999998664142379999657775355435541102515876458664212338
Q gi|254780799|r  592 IVVVIDEMADLMMVARK----DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILG  667 (806)
Q Consensus       592 ivviiDElaDlmm~~~~----~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild  667 (806)
T Consensus       393 ~~~iieea~~~---~p~~~~~~~~~~~~~iar~gRk~~v~l~~~tQrps--~l~~~v~~~~~tkii~r~~~~~d~~~~~~  467 (520)
T COG0433         393 LLIVIEEAHNF---APSSRKAPVKDIIERIAREGRKFGVGLVLATQRPS--DLDDLVLSQANTKIILRLVEPTDQKYISR  467 (520)
T ss_pred             CCEEHHHHHHH---CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHH--HCCHHHHHCCCHHHHHCCCCCHHHHHHHH
T ss_conf             41140777763---87554214689999999860723541357886767--63078986103497740578223666565