HHsearch alignment for GI: 254780799 and conserved domain: COG2804
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=94.17 E-value=0.043 Score=35.34 Aligned_cols=112 Identities=29% Similarity=0.393 Sum_probs=60.2
Q ss_pred HHHHHHHHH-HHHHHHHHCCCCCC-CCCCCCEEEEE---ECCCCCCEEEEHHHCCCHHHHHCCCCCHH-HCCCCCCCCEE
Q ss_conf 999997889-99988630012100-03886125553---02456623873423072134302210002-10456666667
Q gi|254780799|r 374 SSRIIGLSD-DIARSMSAISARVA-VIPRRNAIGIE---LPNDIRETVMLRDLIVSRVFEKNQCDLAI-NLGKSIEGKPI 447 (806)
Q Consensus 374 vSKI~nLad-DIA~aLsa~svRIa-pIPGK~~VGIE---iPN~~r~~V~lreil~s~~f~~s~~~L~i-aLGKdI~G~pv 447 (806)
T Consensus 177 vsriK~ma~LDIaErR~PQdGr~~~~~~~~~-vd~RvStlP~~~GEkvVlRil~~~~------~~l~l~~Lg~~~~~~~~ 249 (500)
T COG2804 177 VSRLKVMAGLDIAERRLPQDGRIRLKLNGRK-VDFRVSTLPTFYGEKVVLRILDKDQ------VILDLEKLGMSPFQLAR 249 (500)
T ss_pred HHHHHHHHCCCHHHCCCCCCCEEEEEECCEE-EEEEEECCCCCCCCEEEEEEECCCC------CCCCHHHHCCCHHHHHH
T ss_conf 9999988437525201787762899808835-8899955788778578999833312------46888783899889999
Q ss_pred EEECCCCCE--EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE-ECCCH
Q ss_conf 854100202--35530477406799999999999829957847888-52310
Q gi|254780799|r 448 IADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM-IDPKM 496 (806)
Q Consensus 448 v~DLakMPH--LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil-iDPK~ 496 (806)
T Consensus 250 ~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l---n~~~~n-I~TiEDPVE 297 (500)
T COG2804 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL---NTPERN-IITIEDPVE 297 (500)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH---CCCCCE-EEEEECCEE
T ss_conf 999972897089996899998899999999986---278850-898407804