HHsearch alignment for GI: 254780799 and conserved domain: COG2805
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=93.66 E-value=0.048 Score=34.91 Aligned_cols=114 Identities=32% Similarity=0.451 Sum_probs=65.8
Q ss_pred EEEECCCCC--EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHH-
Q ss_conf 785410020--23553047740679999999999982995784788852310011102770343122334304566899-
Q gi|254780799|r 447 IIADLARMP--HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVL- 523 (806)
Q Consensus 447 vv~DLakMP--HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL- 523 (806)
T Consensus 116 i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN-~~~~~---------------------HIlT--IEDPIE~vh~sk 171 (353)
T COG2805 116 IVRELAESPRGLILVTGPTGSGKSTTLAAMIDYIN-KHKAK---------------------HILT--IEDPIEYVHESK 171 (353)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCC---------------------CEEE--ECCCHHHHHCCH
T ss_conf 99999828796699867999967879999999984-14775---------------------1687--237468650432
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 99999999999999870899689999999988744786677544677654543222332232346986877634468888
Q gi|254780799|r 524 KWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603 (806)
Q Consensus 524 ~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlm 603 (806)
T Consensus 172 kslI~QREv---------G~dT~sF~~aLraALRe------------D------------P-------DVIlvGEmRD~- 210 (353)
T COG2805 172 KSLINQREV---------GRDTLSFANALRAALRE------------D------------P-------DVILVGEMRDL- 210 (353)
T ss_pred HHHHHHHHH---------CCCHHHHHHHHHHHHHC------------C------------C-------CEEEEECCCCH-
T ss_conf 766668774---------54278899999998602------------9------------9-------97998213469-
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 73210058899999986641423799996577
Q gi|254780799|r 604 MVARKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 604 m~~~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
T Consensus 211 -------E--Ti~~ALtAAETG-HLV~~TLHT 232 (353)
T COG2805 211 -------E--TIRLALTAAETG-HLVFGTLHT 232 (353)
T ss_pred -------H--HHHHHHHHHHCC-CEEEEECCC
T ss_conf -------9--999999898608-877774023