HHsearch alignment for GI: 254780799 and conserved domain: COG3451
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].
Probab=97.25 E-value=0.00068 Score=48.79 Aligned_cols=98 Identities=23% Similarity=0.393 Sum_probs=67.4
Q ss_pred HHHCCCCCHHHCCCCCCCCEEEEECCCC---CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHH---
Q ss_conf 4302210002104566666678541002---0235530477406799999999999829957847888523100111---
Q gi|254780799|r 427 FEKNQCDLAINLGKSIEGKPIIADLARM---PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELS--- 500 (806)
Q Consensus 427 f~~s~~~L~iaLGKdI~G~pvv~DLakM---PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls--- 500 (806)
T Consensus 406 ~~~n~wg~~l~~~kt~~~sPf~~nfH~~~d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~---~~iv~fDk~~-g~~~~~ 481 (796)
T COG3451 406 FRGNPWGEPLTVLKTEDGSPFYFNFHVGEDVGHTLIIGPTGAGKTVLLSFLLAQALKYGN---PQIVAFDKDN-GAYIFI 481 (796)
T ss_pred CCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCC-CHHHHH
T ss_conf 668889975054204899962564355667697499889888789999999999987459---8189984897-357788
Q ss_pred -----HC----CCCHHHHCC---CCCCHHHHHHHHHHHHH
Q ss_conf -----02----770343122---33430456689999999
Q gi|254780799|r 501 -----VY----DGIPNLLTP---VVTNPQKAVTVLKWLVC 528 (806)
Q Consensus 501 -----~Y----~~iPHLl~p---VvTd~~kA~~aL~w~V~ 528 (806)
T Consensus 482 ~a~gG~y~~l~~~~~~~~NPf~~l~~t~~n~~fl~~~~~~ 521 (796)
T COG3451 482 EALGGEYLDLEPGVPSGFNPFEILEDTDENREFLAEWLVK 521 (796)
T ss_pred HHHCCEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 8749887535678774608411037865668999999999