HHsearch alignment for GI: 254780799 and conserved domain: COG4185
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=93.25 E-value=0.45 Score=27.68 Aligned_cols=120 Identities=26% Similarity=0.359 Sum_probs=73.9
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 202-3553047740679999999999982995784788852310011102770343122334304566899999999999
Q gi|254780799|r 454 MPH-LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 454 MPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
T Consensus 1 m~~l~IvaG~NGsGKs----tv~~~~~~~~~~---~~~~VN~D~iA~~--------i~p~--~p~---~~~i~A~r~ai~ 60 (187)
T COG4185 1 MKRLDIVAGPNGSGKS----TVYASTLAPLLP---GIVFVNADEIAAQ--------ISPD--NPT---SAAIQAARVAID 60 (187)
T ss_pred CCEEEEEECCCCCCCE----EEEECCCHHHCC---CEEEECHHHHHHH--------CCCC--CCH---HHHHHHHHHHHH
T ss_conf 9658999668888732----543102322148---7599877998553--------3899--964---778999999999
Q ss_pred HHHHHHHCCCCCH-------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHH
Q ss_conf 9999987089968-------999999998874478667754467765454322233223234698687763446888873
Q gi|254780799|r 533 RYQKMSKIGVRNI-------DGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMV 605 (806)
Q Consensus 533 RY~l~a~~~vRni-------~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~ 605 (806)
T Consensus 61 ~i~~~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~-------------------------I~L~y~~i--~-------- 105 (187)
T COG4185 61 RIARLIDLGRPFIAETTLSGPSILELIKTAKAAGFY-------------------------IVLNYIVI--D-------- 105 (187)
T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEE-------------------------EEEEEEEE--C--------
T ss_conf 999999749984157751361189999999867769-------------------------99999996--7--------
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 210058899999986641423799996
Q gi|254780799|r 606 ARKDIESAVQRLAQMARASGIHVIMAT 632 (806)
Q Consensus 606 ~~~~ve~~i~rlaq~ara~GiHli~aT 632 (806)
T Consensus 106 ---~~elavERVk~RV-a~GGH~IpED 128 (187)
T COG4185 106 ---SVELAVERVKLRV-AKGGHDIPED 128 (187)
T ss_pred ---CHHHHHHHHHHHH-HCCCCCCCHH
T ss_conf ---2888999999998-6178888188