HHsearch alignment for GI: 254780799 and conserved domain: COG5008
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=90.82 E-value=0.16 Score=31.01 Aligned_cols=100 Identities=27% Similarity=0.382 Sum_probs=59.3
Q ss_pred HHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC-C-CCCCCCCEEEEEECCCCCCE
Q ss_conf 999997424863289984104424444432147863999997889999886300121-0-00388612555302456623
Q gi|254780799|r 338 TLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISAR-V-AVIPRRNAIGIELPNDIRET 415 (806)
Q Consensus 338 lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLadDIA~aLsa~svR-I-apIPGK~~VGIEiPN~~r~~ 415 (806)
T Consensus 59 M~~~q~~eF~~~~EcNfai~~~~~gRfRvn--------Af------~qr~~~g~VlRrI~~~IPt--------------- 109 (375)
T COG5008 59 MSAKQREEFEETHECNFAISARDIGRFRVN--------AF------YQRGLAGLVLRRIETKIPT--------------- 109 (375)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCEEEEE--------HH------HHCCCCEEEEEEECCCCCC---------------
T ss_conf 649999998752652279974888607740--------66------6477740156440115884---------------
Q ss_pred EEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 873423072134302210002104566666678541002023553047740679999999999982995784788
Q gi|254780799|r 416 VMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490 (806)
Q Consensus 416 V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkli 490 (806)
T Consensus 110 -----------~e--eL~LPevl-k~l-------a~~kRGLviiVGaTGSGKSTtmAaMi~---yRN~~s~gHIi 160 (375)
T COG5008 110 -----------FE--ELKLPEVL-KDL-------ALAKRGLVIIVGATGSGKSTTMAAMIG---YRNKNSTGHII 160 (375)
T ss_pred -----------HH--HCCCCHHH-HHH-------HCCCCCEEEEECCCCCCCHHHHHHHHC---CCCCCCCCCEE
T ss_conf -----------77--61984889-975-------204374599987788884016899860---13468877358