HHsearch alignment for GI: 254780799 and conserved domain: PRK06871
>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=95.51 E-value=0.056 Score=34.44 Aligned_cols=180 Identities=21% Similarity=0.286 Sum_probs=96.4
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHHCCHHH--------EEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHH
Q ss_conf 00202-355304774067999999999998299578--------478885231001110277034312233430456689
Q gi|254780799|r 452 ARMPH-LLIAGTTGSGKSVAINTMILSLLYRMTPAQ--------CRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTV 522 (806)
Q Consensus 452 akMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~P~e--------vkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~a 522 (806)
T Consensus 20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~-------~~g~HPD~-~~i~~~--~~k----- 84 (324)
T PRK06871 20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLF-------QAGNHPDF-HILEPI--DGK----- 84 (324)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-------HCCCCCCE-EEEECC--CCC-----
T ss_conf 995437876899997899999999999828999999988889899999-------73899987-998467--888-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHH
Q ss_conf 99999999999999987089968999999998874478667754467765454322233223234698687763446888
Q gi|254780799|r 523 LKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADL 602 (806)
Q Consensus 523 L~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDl 602 (806)
T Consensus 85 ----------------~I~vd~IR~l~~~~~~~~------------------------------~~g~~KV~iI~~-ae~ 117 (324)
T PRK06871 85 ----------------DIGVDQVREINEKVSQFA------------------------------QQGGNKVVYIQG-AER 117 (324)
T ss_pred ----------------CCCHHHHHHHHHHHHHCC------------------------------CCCCCEEEEECC-HHH
T ss_conf ----------------788999999999986462------------------------------205966999758-888
Q ss_pred HHHCC-----CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCC
Q ss_conf 87321-----0058899999986641423799996577753554355411025158764586642123388645786588
Q gi|254780799|r 603 MMVAR-----KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQ 677 (806)
Q Consensus 603 mm~~~-----~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~ 677 (806)
T Consensus 118 m~~~AaNALLKtLEEP---------p~~~~fiL~t~~~~~--ll~TI~SRC-q~~~~~~p~~~~~~~wL~~~~----~~~ 181 (324)
T PRK06871 118 LTEAAANALLKTLEEP---------RPNTYFLLQADLSAS--LLATIYSRC-QTWLIHVPEEQIALDWLQAQS----SGE 181 (324)
T ss_pred HHHHHHHHHHHHHCCC---------CCCEEEEEEECCCCC--CCCHHHHCC-CCEECCCCCHHHHHHHHHHHC----CCC
T ss_conf 5799999999983389---------878389998787010--324086266-120089949999999999746----887
Q ss_pred -CCEE--EECCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf -7547--73689832588833489889999999997
Q gi|254780799|r 678 -GDML--YMTGGGRVQRIHGPFVSDIEVEKVVSHLK 710 (806)
Q Consensus 678 -gdml--~~~~~~~~~r~~g~~v~~~ev~~v~~~~~ 710 (806)
T Consensus 182 ~~~~~~al~~~~g~pl~A~-~~~~~~~~~~r~~~~~ 216 (324)
T PRK06871 182 IQEIQTALRINYGRPLLAL-TFLEQGLLEQRKTFLR 216 (324)
T ss_pred HHHHHHHHHHCCCCHHHHH-HHHCCCHHHHHHHHHH
T ss_conf 2999999997699879999-9868779999999999