HHsearch alignment for GI: 254780799 and conserved domain: PRK13700
>PRK13700 conjugal transfer protein TraD; Provisional.
Probab=97.36 E-value=0.00026 Score=51.89 Aligned_cols=211 Identities=21% Similarity=0.219 Sum_probs=112.4
Q ss_pred CCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH------------H----------
Q ss_conf 666667854100202355304774067999999999998299578478885231001------------1----------
Q gi|254780799|r 442 IEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE------------L---------- 499 (806)
Q Consensus 442 I~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE------------l---------- 499 (806)
T Consensus 174 i~glpl~k~s-E~qH~li~GTtGtGKS~~ir~LL~qIR~RGd----rAIIyD~~G~Fv~~FY~p~~DiILNPfDaRc~~W 248 (732)
T PRK13700 174 IGDLPIIRDS-EIQNFCLHGTVGAGKSEVIRRLANYARQRGD----MVVIYDRSGEFVKSYYDPSIDKILNPLDARCAAW 248 (732)
T ss_pred ECCCCCCCCC-HHHEEEEECCCCCCHHHHHHHHHHHHHHCCC----CEEEECCCCCCHHHHCCCCCCEEECCHHHCCCCC
T ss_conf 6786667652-0312677468888899999999999997299----5899939985339763988886548201058987
Q ss_pred HHCCCC---------HHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--------------------
Q ss_conf 102770---------343122334304-56689999999999999999870899689999--------------------
Q gi|254780799|r 500 SVYDGI---------PNLLTPVVTNPQ-KAVTVLKWLVCEMEERYQKMSKIGVRNIDGFN-------------------- 549 (806)
Q Consensus 500 s~Y~~i---------PHLl~pVvTd~~-kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN-------------------- 549 (806)
T Consensus 249 s~w~E~~~~~Dfd~iA~sLIP~~~~~DpFW~~sARtIfae~~~~L---~~~~~~t~~~Ll~~ll~~~le~L~~~L~gT~A 325 (732)
T PRK13700 249 DLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLM---RNDPNRSYSKLVDTLLSIKIEKLRTYLRNSPA 325 (732)
T ss_pred CHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC
T ss_conf 557660787649999997489999998068888999999999999---86589999999999983799999999769950
Q ss_pred --------HHH------------HH--H----HHCCCCCCCCCCCC---CCCCCCCCCC----CCCC-------------
Q ss_conf --------999------------98--8----74478667754467---7654543222----3322-------------
Q gi|254780799|r 550 --------LKV------------AQ--Y----HNTGKKFNRTVQTG---FDRKTGEAIY----ETEH------------- 583 (806)
Q Consensus 550 --------~k~------------~~--~----~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~------------- 583 (806)
T Consensus 326 a~lv~~~aeKta~SIrsvL~~yi~~LRyL~~l~~~g~~FSIRdW~~~~~ed~~~g-wLFITs~~~q~~aLrPLIS~Wldi 404 (732)
T PRK13700 326 ANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNGEPFTIRDWMRGVREDQKNG-WLFISSNADTHASLKPVISMWLSI 404 (732)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCC-EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 5301876088999999999987888763034788899841889755345688887-699815788998888899999999
Q ss_pred -------CCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC-CCCCCH-----HHHHCCCC
Q ss_conf -------32346986877634468888732100588999999866414237999965777-535543-----55411025
Q gi|254780799|r 584 -------FDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS-VDVITG-----TIKANFPT 650 (806)
Q Consensus 584 -------~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs-vdvitg-----~ikan~p~ 650 (806)
T Consensus 405 A~~aLLsl~~~~~RRiWfiiDELpSL----~-KL-p~L~~~Lae~RKfGGc~VlG~Qs~aQL~~iYG~~~A~ti~dl~nT 478 (732)
T PRK13700 405 AIRGLLAMGENRNRRVWFFCDELPTL----H-KL-PDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNT 478 (732)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCCCC----C-CC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998479998886159997544343----3-40-237899987520377589960649999998778789999986416
Q ss_pred EEEEEECCCCCCHHHCC
Q ss_conf 15876458664212338
Q gi|254780799|r 651 RISFQVSSKIDSRTILG 667 (806)
Q Consensus 651 riaf~v~s~~dSrtild 667 (806)
T Consensus 479 kl~fR~~d~~tA~~~s~ 495 (732)
T PRK13700 479 RAFFRSPSHKIAEFAAG 495 (732)
T ss_pred EEEEECCCHHHHHHHHH
T ss_conf 68986798789999998