HHsearch alignment for GI: 254780799 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=96.27 E-value=0.0057 Score=41.87 Aligned_cols=90 Identities=24% Similarity=0.397 Sum_probs=54.4
Q ss_pred CCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 03886125553024566238734230721343022100021045666666785410020235530477406799999999
Q gi|254780799|r 397 VIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 397 pIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
T Consensus 101 P~~~g~sitIRk~~~~~--~tl~dlv~~g~~t~~~~~~---L~~aV~~--------r-~nilVsGgTGSGKTTllnaL~~ 166 (323)
T PRK13833 101 PVVSGPAFTIRRRASRL--IPLDDYVRSKVMTEAQAST---IRSAISS--------R-LNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCCCCCEEEEECCCCCC--CCHHHHHHCCCCCHHHHHH---HHHHHHC--------C-CCEEEECCCCCCHHHHHHHHHH
T ss_conf 86799529996878999--9999998769999999999---9999981--------8-9689991777756899999998
Q ss_pred HHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf 999829957847888523100111027
Q gi|254780799|r 477 SLLYRMTPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 477 SlLyk~~P~evkliliDPK~vEls~Y~ 503 (806)
T Consensus 167 ~i-~~~~p~e-RivtIEDt-~EL~~~~ 190 (323)
T PRK13833 167 EI-VASAPED-RLVILEDT-AEIQCAA 190 (323)
T ss_pred HH-CCCCCHH-EEEEECCC-CCCCCCC
T ss_conf 64-0289323-39994575-0114678