HHsearch alignment for GI: 254780799 and conserved domain: PRK13833

>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=96.27  E-value=0.0057  Score=41.87  Aligned_cols=90  Identities=24%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             CCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             03886125553024566238734230721343022100021045666666785410020235530477406799999999
Q gi|254780799|r  397 VIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMIL  476 (806)
Q Consensus       397 pIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~  476 (806)
T Consensus       101 P~~~g~sitIRk~~~~~--~tl~dlv~~g~~t~~~~~~---L~~aV~~--------r-~nilVsGgTGSGKTTllnaL~~  166 (323)
T PRK13833        101 PVVSGPAFTIRRRASRL--IPLDDYVRSKVMTEAQAST---IRSAISS--------R-LNIVISGGTGSGKTTLANAVIA  166 (323)
T ss_pred             CCCCCCEEEEECCCCCC--CCHHHHHHCCCCCHHHHHH---HHHHHHC--------C-CCEEEECCCCCCHHHHHHHHHH
T ss_conf             86799529996878999--9999998769999999999---9999981--------8-9689991777756899999998


Q ss_pred             HHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf             999829957847888523100111027
Q gi|254780799|r  477 SLLYRMTPAQCRLIMIDPKMLELSVYD  503 (806)
Q Consensus       477 SlLyk~~P~evkliliDPK~vEls~Y~  503 (806)
T Consensus       167 ~i-~~~~p~e-RivtIEDt-~EL~~~~  190 (323)
T PRK13833        167 EI-VASAPED-RLVILEDT-AEIQCAA  190 (323)
T ss_pred             HH-CCCCCHH-EEEEECCC-CCCCCCC
T ss_conf             64-0289323-39994575-0114678