HHsearch alignment for GI: 254780799 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.68 E-value=0.0078 Score=40.86 Aligned_cols=40 Identities=45% Similarity=0.728 Sum_probs=33.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 2355304774067999999999998299578478885231001110
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
T Consensus 164 NIlIsGgTGSGKTTllnALl~~I-----P~~eRIvtIED-t~EL~l 203 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAI-----PPQERLITIED-TLELVI 203 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC-----CCCCCEEEECC-CCCCCC
T ss_conf 89998889861999999999628-----96552799611-500258