HHsearch alignment for GI: 254780799 and conserved domain: PRK13873
>PRK13873 conjugal transfer ATPase TrbE; Provisional.
Probab=96.64 E-value=0.0024 Score=44.67 Aligned_cols=305 Identities=19% Similarity=0.317 Sum_probs=148.8
Q ss_pred CCHHHCCCCCCCCEEEEECC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH-HHH------HHCC
Q ss_conf 00021045666666785410--02023553047740679999999999982995784788852310-011------1027
Q gi|254780799|r 433 DLAINLGKSIEGKPIIADLA--RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM-LEL------SVYD 503 (806)
Q Consensus 433 ~L~iaLGKdI~G~pvv~DLa--kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~-vEl------s~Y~ 503 (806)
T Consensus 418 ~p~l~~~~T~g~tPf~fN~H~gdvGHtlI~GpTGsGKTvll~~l~~q-~~ry~~~--~vf~FDkd~s~~i~~~a~GG~y~ 494 (815)
T PRK13873 418 GPPLLYGRTEGSTPFRLSLHVGDVGHTLVVGPTGAGKSVLLALMALQ-FRRYPGS--QVFAFDFGGSIRAAALAMGGDWH 494 (815)
T ss_pred CCEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHHCCCC--CEEEEECCCCHHHHHHHHCCEEE
T ss_conf 88058863489996687664688764389788999899999999999-8644898--48999789878999998299876
Q ss_pred CC----------HHHHCCC--CCCHHHHHHHHHHHHHHHHHH---------------HHHHHH--CCCCCHHHHHHHH--
Q ss_conf 70----------3431223--343045668999999999999---------------999987--0899689999999--
Q gi|254780799|r 504 GI----------PNLLTPV--VTNPQKAVTVLKWLVCEMEER---------------YQKMSK--IGVRNIDGFNLKV-- 552 (806)
Q Consensus 504 ~i----------PHLl~pV--vTd~~kA~~aL~w~V~EMe~R---------------Y~l~a~--~~vRni~~yN~k~-- 552 (806)
T Consensus 495 ~lg~~~~~~~~~~~~f~Pl~~~d~~~~r~~~~~wi~~ll~~~g~~~tp~~~~~i~~Av~~l~~~~~~~Rtls~l~~~l~~ 574 (815)
T PRK13873 495 DLGGGLSDGADGSVALQPLARIDDPAERAWAAEWIAAILAREGVAVTPEVKEHIWSALTSLASAPVEERTLTGLSVLLQS 574 (815)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCC
T ss_conf 03565556789987779876889978889999999999961798889899999999999985198521739999988188
Q ss_pred ---HHHH---HCCCCCCCCCCCCCCCCCCCC------CCCCCCC-------------------CCCCCCEEEEEHHHHHH
Q ss_conf ---9887---447866775446776545432------2233223-------------------23469868776344688
Q gi|254780799|r 553 ---AQYH---NTGKKFNRTVQTGFDRKTGEA------IYETEHF-------------------DFQHMPYIVVVIDEMAD 601 (806)
Q Consensus 553 ---~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------------------~~~~lp~ivviiDElaD 601 (806)
T Consensus 575 ~~L~~~L~~w~~~G~~G----~lfD~~~D~l~~~~~~~Fe~~~l~~~~~~~pvl~YLf~rie~~lDGrp-tli~iDEaW~ 649 (815)
T PRK13873 575 NALKQALRPYCLGGPYG----RLLDAEHERLGSADVQAFETEGLMGTAAAPAVLSYLFHRIEDRFDGRP-TLLILDEGWL 649 (815)
T ss_pred CHHHHHHHHHHCCCCCE----ECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEHHHHHH
T ss_conf 14999999983789845----426886567776773699873037865178999999999999758996-6997586587
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC----CCHHHHHCCCCEEEEEECCCC--CCHHHCCCCCHHHHC
Q ss_conf 88732100588999999866414237999965777535----543554110251587645866--421233886457865
Q gi|254780799|r 602 LMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDV----ITGTIKANFPTRISFQVSSKI--DSRTILGEQGAEQLL 675 (806)
Q Consensus 602 lmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdv----itg~ikan~p~riaf~v~s~~--dSrtild~~gae~Ll 675 (806)
T Consensus 650 ~L--~~~~F~~~i~~wLkT~RK~N~~vv~aTQS~~-di~~S~I~~aiie~c~T~IfLPNp~A~~~~~~~~Y--------- 717 (815)
T PRK13873 650 AL--DDPVFAAQLREWLKTLRKKNASVIFATQSLA-DIDDSAIAPAIIESCPTRIFLPNERAIEPQIAAIY--------- 717 (815)
T ss_pred HH--CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCCCHHHHHHHHCCEEEECCCCCCCCCHHHHHH---------
T ss_conf 72--8989999999999999870877999778889-98649668999986885698778222770068999---------
Q ss_pred CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCC-CCCCC------CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8875477368983258883348988999999999712897421-10012------4556667788888777703899999
Q gi|254780799|r 676 GQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYI-DIKDK------ILLNEEMRFSENSSVADDLYKQAVD 748 (806)
Q Consensus 676 g~gdml~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~~y~-~~~~~------~~~~~~~~~~~~~~~~d~l~~~a~~ 748 (806)
T Consensus 718 -----------------~~fGLn~rqieiIa~a---~pKRdYy~~s~~g~Rlf~L~L~~~~la~~~-~s~~~d~-~~~~~ 775 (815)
T PRK13873 718 -----------------RRFGLNDRQIEILARA---TPKRDYYCQSRRGNRLFELGLGPVALAFCA-ASSKADQ-ALIDR 775 (815)
T ss_pred -----------------HHCCCCHHHHHHHHHC---CCCCEEEEECCCCCEEEECCCCHHHHHEEE-CCCHHHH-HHHHH
T ss_conf -----------------8749999999999733---746635898799877897389704210000-3888899-99999
Q ss_pred HHHHCCCE--EEEHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99965985--00014222001177899999999977
Q gi|254780799|r 749 IVLRDNKA--SISYIQRRLGIGYNRAASIIENMEEK 782 (806)
Q Consensus 749 ~v~~~~~~--s~s~lqr~~~igy~raar~~~~~e~~ 782 (806)
T Consensus 776 l~~~~g~~~~~~~wl~~~---g~~~a~~~~~~~~~~ 808 (815)
T PRK13873 776 VLAEHGRDGFAAAWLRHR---GLDWAADLLPDLTNL 808 (815)
T ss_pred HHHHHCCCHHHHHHHHHC---CCCHHHHHHHHHHHC
T ss_conf 999819101599999965---983688876543111