HHsearch alignment for GI: 254780799 and conserved domain: PRK13897
>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=92.73 E-value=0.035 Score=35.95 Aligned_cols=65 Identities=20% Similarity=0.387 Sum_probs=44.7
Q ss_pred CCE-EEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC--CCC--C--HHHHHCCCCEEEEEECCC
Q ss_conf 986-8776344688887321005889999998664142379999657775--355--4--355411025158764586
Q gi|254780799|r 589 MPY-IVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV--DVI--T--GTIKANFPTRISFQVSSK 659 (806)
Q Consensus 589 lp~-ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv--dvi--t--g~ikan~p~riaf~v~s~ 659 (806)
T Consensus 403 ~p~~VLfLLDEFanL----G-kIp~fekaiA~m-rGYGIrl~lIiQslsQLk~~YG~~~a~tIl~Nc~~~I~f~~nD~ 474 (628)
T PRK13897 403 EPYGVLFLMDEFPTL----G-KMEQFKTGIAYF-RGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNI 474 (628)
T ss_pred CCEEEEEEECCCCCC----C-CHHHHHHHHHHH-HCCCCEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEECCCCH
T ss_conf 874589985100214----8-748899999987-03687899999769999988573447789855863798668975