HHsearch alignment for GI: 254780799 and conserved domain: PRK13897

>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=92.73  E-value=0.035  Score=35.95  Aligned_cols=65  Identities=20%  Similarity=0.387  Sum_probs=44.7

Q ss_pred             CCE-EEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC--CCC--C--HHHHHCCCCEEEEEECCC
Q ss_conf             986-8776344688887321005889999998664142379999657775--355--4--355411025158764586
Q gi|254780799|r  589 MPY-IVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV--DVI--T--GTIKANFPTRISFQVSSK  659 (806)
Q Consensus       589 lp~-ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv--dvi--t--g~ikan~p~riaf~v~s~  659 (806)
T Consensus       403 ~p~~VLfLLDEFanL----G-kIp~fekaiA~m-rGYGIrl~lIiQslsQLk~~YG~~~a~tIl~Nc~~~I~f~~nD~  474 (628)
T PRK13897        403 EPYGVLFLMDEFPTL----G-KMEQFKTGIAYF-RGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNI  474 (628)
T ss_pred             CCEEEEEEECCCCCC----C-CHHHHHHHHHHH-HCCCCEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEECCCCH
T ss_conf             874589985100214----8-748899999987-03687899999769999988573447789855863798668975