HHsearch alignment for GI: 254780799 and conserved domain: PRK13898
>PRK13898 type IV secretion system ATPase VirB4; Provisional.
Probab=96.88 E-value=0.0024 Score=44.71 Aligned_cols=213 Identities=21% Similarity=0.375 Sum_probs=109.4
Q ss_pred HHHCCCCCCCCEEEEECC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH-HHHH------HCC--
Q ss_conf 021045666666785410--02023553047740679999999999982995784788852310-0111------027--
Q gi|254780799|r 435 AINLGKSIEGKPIIADLA--RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM-LELS------VYD-- 503 (806)
Q Consensus 435 ~iaLGKdI~G~pvv~DLa--kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~-vEls------~Y~-- 503 (806)
T Consensus 425 av~~~~T~~gtpy~fNfH~~d~GHtlI~G~TGsGKTtl~~fL~aq-~~ky~~---~~f~fDkd~~~~i~~~a~GG~Y~~l 500 (800)
T PRK13898 425 AVTVFDTTSGTPFYFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQ-AMKFSP---RMFFFDKDRGAEIFIRALNGVYTVI 500 (800)
T ss_pred CCEECCCCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHHHCC---EEEEEECCCCHHHHHHHHCCEEEEC
T ss_conf 665030389987798674598775699899999899999999999-875488---7999979998699999829888743
Q ss_pred --CCHHHHCCCCCC--HHHHH----------------------HHHHHHHH---HH---HHHHHHHHH-CCCCCHHHHHH
Q ss_conf --703431223343--04566----------------------89999999---99---999999987-08996899999
Q gi|254780799|r 504 --GIPNLLTPVVTN--PQKAV----------------------TVLKWLVC---EM---EERYQKMSK-IGVRNIDGFNL 550 (806)
Q Consensus 504 --~iPHLl~pVvTd--~~kA~----------------------~aL~w~V~---EM---e~RY~l~a~-~~vRni~~yN~ 550 (806)
T Consensus 501 ~~g~~tg~nP~~l~dt~~n~~fl~~~l~~l~~~~g~~~t~~~~~~I~~av~~~~~l~~~~r~ls~l~~~l~~~~~~~L~~ 580 (800)
T PRK13898 501 EPRLKCNFNPLQLDDTPENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAG 580 (800)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 79985686877799986788999999999997379999999999999999998608921132657998735488468999
Q ss_pred HHHHHHHCCCC---CCCCCCCCCCCCCCCC-CCC------CC--------------CCCCCCCCEEEEEHHHHHHHHHHC
Q ss_conf 99988744786---6775446776545432-223------32--------------232346986877634468888732
Q gi|254780799|r 551 KVAQYHNTGKK---FNRTVQTGFDRKTGEA-IYE------TE--------------HFDFQHMPYIVVVIDEMADLMMVA 606 (806)
Q Consensus 551 k~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~------~~--------------~~~~~~lp~ivviiDElaDlmm~~ 606 (806)
T Consensus 581 rL~~w~~~G~~g~~fDn~-~D~l~~~~~~~~gfd~t~ll~~~~~~~pvl~Ylf~rie~~ldG~p~-ii~iDE~W~~l~-- 656 (800)
T PRK13898 581 RIAMWHGKGSHAAIFDNE-EDLLDFQKARVFGFEMTELLKDPVSLAPVLLYLFHRISISLDGTPS-MIVLDEAWALID-- 656 (800)
T ss_pred HHHHHHCCCCEEECCCCC-CCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEECHHHHHC--
T ss_conf 999986699805224897-5566866680899984675288204899999999999975289826-999603366637--
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC---CCHHHHHCCCCEEEEE
Q ss_conf 100588999999866414237999965777535---5435541102515876
Q gi|254780799|r 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDV---ITGTIKANFPTRISFQ 655 (806)
Q Consensus 607 ~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdv---itg~ikan~p~riaf~ 655 (806)
T Consensus 657 ~~~f~~~i~~~lkt~RK~N~~vv~aTQs~~d~~~s~i~~~iieq~~T~I~LP 708 (800)
T PRK13898 657 NPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLP 708 (800)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCHHHHHHHHCCEEEECC
T ss_conf 9999999999999998739779998088999862846899998688579887