HHsearch alignment for GI: 254780799 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=95.62 E-value=0.0093 Score=40.27 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=38.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC--CCHHHHCC
Q ss_conf 235530477406799999999999829957847888523100111027--70343122
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD--GIPNLLTP 511 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~--~iPHLl~p 511 (806)
T Consensus 162 NilI~G~TgSGKTTll~aL~~-----~ip~~eRiitIED-t~EL~l~~~pn~v~l~~~ 213 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALR-----EIPAIERLITVED-AREIVLSSHPNRVHLLAS 213 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHH-----CCCCCCCEEEECC-CHHHCCCCCCCEEEEEEC
T ss_conf 199988889889999999983-----5895353566314-066356668888999971