HHsearch alignment for GI: 254780799 and conserved domain: TIGR00929
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=94.97 E-value=0.032 Score=36.24 Aligned_cols=314 Identities=20% Similarity=0.257 Sum_probs=182.6
Q ss_pred EECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE------ECCCCCCEEEEHHHCCCHHHHH
Q ss_conf 1044244444321478639999978899998863001210003886125553------0245662387342307213430
Q gi|254780799|r 356 RPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIE------LPNDIRETVMLRDLIVSRVFEK 429 (806)
Q Consensus 356 ~pGPVVTrYEi~PApGVKvSKI~nLadDIA~aLsa~svRIapIPGK~~VGIE------iPN~~r~~V~lreil~s~~f~~ 429 (806)
T Consensus 385 ~~~~~~~v~aGv---G-aL~~~~~L~~~~~~a~~~l~~~-G~~~~~E~~~~e~~f~s~LP~n~~~~~R~-~~its~nfA~ 458 (931)
T TIGR00929 385 EHHLSLVVYAGV---G-ALEDKEKLDAALSEARSLLNAK-GIVAVKETLGLEAAFWSQLPGNFKYNPRK-SLITSRNFAS 458 (931)
T ss_pred ECCEEEEEEECC---C-CCCCHHHHHHHHHHHHHHHHHC-CCEEEECCCCHHHHHHHHCCCCCCCCCCC-HHHHHHHHHH
T ss_conf 302278998052---5-6788889999999999998726-84243201001157897263544100350-1111799998
Q ss_pred -------------C-----CCC-CHHHCCCCCCCCEEEEECC------------CCC--EEEEEECCCCHHHHHHHHHHH
Q ss_conf -------------2-----210-0021045666666785410------------020--235530477406799999999
Q gi|254780799|r 430 -------------N-----QCD-LAINLGKSIEGKPIIADLA------------RMP--HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 430 -------------s-----~~~-L~iaLGKdI~G~pvv~DLa------------kMP--HLLIAGtTGSGKSV~iN~iI~ 476 (806)
T Consensus 459 l~~~~~~~~G~~~~NCP~~~WG~~al~~l~t~~gtPfyfNFH~~~~~~~~A~~~~r~~GhT~IfG~~G~GKTtLl~fL~a 538 (931)
T TIGR00929 459 LIPFHNFNLGKSQNNCPEYPWGDPALTLLKTQSGTPFYFNFHVRDAKEKNADEGKRVLGHTLIFGPTGSGKTTLLNFLLA 538 (931)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 87765146888888488886668706898717898602245457212465000311038777888889846999999999
Q ss_pred HHHHHCCH-HHEEEEEECC---------------CHHH-------HHHCCCC-H-H------HHCC--------------
Q ss_conf 99982995-7847888523---------------1001-------1102770-3-4------3122--------------
Q gi|254780799|r 477 SLLYRMTP-AQCRLIMIDP---------------KMLE-------LSVYDGI-P-N------LLTP-------------- 511 (806)
Q Consensus 477 SlLyk~~P-~evkliliDP---------------K~vE-------ls~Y~~i-P-H------Ll~p-------------- 511 (806)
T Consensus 539 ~~~-ky~~~~a~~~~~fDkd~g~~~~~~a~gG~Y~~i~G~~T~~~~g~~~~~NPl~~~~g~~l~~t~~n~~F~~~~~~~l 617 (931)
T TIGR00929 539 QLQ-KYKPNFALTIFAFDKDRGMEIFIRALGGKYLEIKGDATVAADGEPFGFNPLQGIDGEALEDTERNRAFLKEWLAML 617 (931)
T ss_pred HHH-CCCCCCCEEEEEEECCCCCHHHHEEECCEEEEECCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 974-2488987069998878982104111174565303301016788866568020123367777724407999999999
Q ss_pred ----CCC---CHHHHHHHHHHHHHHHHHHH----HHH-------HHCCCCCHH------HHHHHHHHHHHCCCCC-CCCC
Q ss_conf ----334---30456689999999999999----999-------870899689------9999999887447866-7754
Q gi|254780799|r 512 ----VVT---NPQKAVTVLKWLVCEMEERY----QKM-------SKIGVRNID------GFNLKVAQYHNTGKKF-NRTV 566 (806)
Q Consensus 512 ----VvT---d~~kA~~aL~w~V~EMe~RY----~l~-------a~~~vRni~------~yN~k~~~~~~~~~~~-~~~~ 566 (806)
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~r~l~~l~~~l~~~~~~~~~~~~~l~~~L~~w~~~~~~G~~Gef 697 (931)
T TIGR00929 618 VTLDGETDEEISAEDRNALSSAIDSLYEEDQKEHPAIRSLSDLLNFLPKDSIEVVEARNSLADRLERWLKGGDYGGDGEF 697 (931)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 85127665436789999999998888731441125522089999972577530004502389998875178987555203
Q ss_pred CCCCC-CCCCCCCCCC-----------------C--------------CCCCCCC-CEEEEEHHHHHHHHHHCCCHHHHH
Q ss_conf 46776-5454322233-----------------2--------------2323469-868776344688887321005889
Q gi|254780799|r 567 QTGFD-RKTGEAIYET-----------------E--------------HFDFQHM-PYIVVVIDEMADLMMVARKDIESA 613 (806)
Q Consensus 567 ~~~~~-~~~~~~~~~~-----------------~--------------~~~~~~l-p~ivviiDElaDlmm~~~~~ve~~ 613 (806)
T Consensus 698 ~wLFD~~~~D~Ldl~~~~~~gfd~~~ll~~~e~~~~~~p~~~YLf~Ri~~~~dg~~r~~~~~~DEaw~~l--~~p~~~~~ 775 (931)
T TIGR00929 698 QWLFDGNETDSLDLSKADIIGFDLTELLDNPELEKVATPVLLYLFHRIEEALDGSNRRFLIVIDEAWKLL--GDPVFAAK 775 (931)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH--CCHHHHHH
T ss_conf 2110689754123789714787554642476866789999999999999972413586799851305332--69078999
Q ss_pred HHHHHHHHHHCCEEEEEEECCC-CCCC---CCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEEC-CCCC
Q ss_conf 9999986641423799996577-7535---543554110251587645866421233886457865887547736-8983
Q gi|254780799|r 614 VQRLAQMARASGIHVIMATQRP-SVDV---ITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMT-GGGR 688 (806)
Q Consensus 614 i~rlaq~ara~GiHli~aTqrP-svdv---itg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~-~~~~ 688 (806)
T Consensus 776 i~~~l~t~RK~NG~~v~ATQ~~Y~d~~~s~i~~~~~~~~~T~I~l-----------------------------Pn~~a~ 826 (931)
T TIGR00929 776 IKDWLKTLRKANGIVVLATQSIYNDALESRIADTLIEQCATKIFL-----------------------------PNPKAD 826 (931)
T ss_pred HHHHHHHHHHHCCEEEEECCHHHHHHHCCCHHHHHHHHCCCEEEC-----------------------------CCCCCC
T ss_conf 999987576609779863001477763154246889615834324-----------------------------884568
Q ss_pred EEEEEECC----CCHHHHHHHHH
Q ss_conf 25888334----89889999999
Q gi|254780799|r 689 VQRIHGPF----VSDIEVEKVVS 707 (806)
Q Consensus 689 ~~r~~g~~----v~~~ev~~v~~ 707 (806)
T Consensus 827 ~~dy~~~f~~~glte~E~~~l~~ 849 (931)
T TIGR00929 827 REDYAEGFGIKGLTEREFELLKS 849 (931)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 58999855888979899999985