HHsearch alignment for GI: 254780799 and conserved domain: TIGR02163
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=91.34 E-value=1.1 Score=24.84 Aligned_cols=80 Identities=16% Similarity=-0.016 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---------CCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHH--
Q ss_conf 9999999999999999999999984427--0---------6896313-----68864500013467899999999999--
Q gi|254780799|r 22 SKKKMKIVAGLILLCTVFAITLALGTWD--V---------YDPSFSY-----ITLRSPKNFLGYGGAIFADVAIQFFG-- 83 (806)
Q Consensus 22 ~~rrl~Ei~Gl~Li~~al~l~iSL~SYs--p---------~DPs~~~-----~s~~~v~N~~G~lGA~iAd~L~~lFG-- 83 (806)
T Consensus 3 ~lRRl~Ql~~L~LF~~~p~ag~~iL~GNlSsS~ll~tiPLsDP-li~LQ~l~A~~~p~~~aL--iGA~iI~~FYal~ggR 79 (263)
T TIGR02163 3 LLRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDP-LITLQILLAGHLPDLNAL--IGALIIVAFYALFGGR 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 8999999999999987786432020201688887077586436-899999986107899999--9999999999998520
Q ss_pred -HHHHHHHHHHHHHHHHHHHCC
Q ss_conf -999999999999999998276
Q gi|254780799|r 84 -IASVFFLPPPTMWALSLLFDK 104 (806)
Q Consensus 84 -~~Ayllpl~Ll~~g~~ll~~k 104 (806)
T Consensus 80 aFCsWVCP~N~vTD~A~wLr~K 101 (263)
T TIGR02163 80 AFCSWVCPLNLVTDLAAWLRRK 101 (263)
T ss_pred HEEEEECCCCCHHHHHHHHHHH
T ss_conf 0245454886411258999986