HHsearch alignment for GI: 254780799 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=93.24 E-value=0.034 Score=36.12 Aligned_cols=70 Identities=34% Similarity=0.554 Sum_probs=47.3
Q ss_pred HCCCCCCCCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCE--EEEEECCCCHH
Q ss_conf 0012100038861255530245662387342307213430221000210456666667854100202--35530477406
Q gi|254780799|r 390 AISARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPH--LLIAGTTGSGK 467 (806)
Q Consensus 390 a~svRIapIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPH--LLIAGtTGSGK 467 (806)
T Consensus 194 ~~DiRVSt~P----------t~fGERvVMR-LLDK~---~~~l~L~-~LGm~~~~l~~~~~li~rpHGIiLVTGPTGSGK 258 (495)
T TIGR02533 194 DIDIRVSTVP----------TSFGERVVMR-LLDKD---AVRLDLE-ALGMSPELLSSLERLIKRPHGIILVTGPTGSGK 258 (495)
T ss_pred EEEEEEEECC----------CCCCCEEEHH-HHCHH---HHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 4667885305----------8997100000-11204---7777588-648888899999999718896188417789852
Q ss_pred HHHHHHH
Q ss_conf 7999999
Q gi|254780799|r 468 SVAINTM 474 (806)
Q Consensus 468 SV~iN~i 474 (806)
T Consensus 259 tTTLYaa 265 (495)
T TIGR02533 259 TTTLYAA 265 (495)
T ss_pred HHHHHHH
T ss_conf 5889999