HHsearch alignment for GI: 254780799 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.62 E-value=0.01 Score=40.04 Aligned_cols=51 Identities=33% Similarity=0.544 Sum_probs=35.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH-CCCCHHHHCC
Q ss_conf 02355304774067999999999998299578478885231001110-2770343122
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV-YDGIPNLLTP 511 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~-Y~~iPHLl~p 511 (806)
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i-----~~~~rivtiEd-~~El~l~~~~~v~l~~~ 77 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI-----PPDERIITIED-TAELQLPHPNWVRLVTR 77 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC-----CCCCCEEEECC-CHHHCCCCCCEEEEEEE
T ss_conf 989998999998999999999613-----34564598415-35404777756888860