HHsearch alignment for GI: 254780799 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.50 E-value=0.93 Score=25.32 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=74.4
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH-------------------HHEEEEEECCC--HHHHHHCCCCHH
Q ss_conf 541002023553047740679999999999982995-------------------78478885231--001110277034
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP-------------------AQCRLIMIDPK--MLELSVYDGIPN 507 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P-------------------~evkliliDPK--~vEls~Y~~iPH 507 (806)
T Consensus 22 l~i~~Gei~~iiG~nGaGKSTLlk~i~G-l-~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e~i~~ 99 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNG-L-LGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAF 99 (211)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC-C-CCCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHHHHHH
T ss_conf 8884997999988999989999999964-6-7798887789999999799899840389997783253055869999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3122334304566899999999999999998708996899999-999887447866775446776545432223322323
Q gi|254780799|r 508 LLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNL-KVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDF 586 (806)
Q Consensus 508 Ll~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (806)
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSGGqkQrv~iAral---------------------------- 149 (211)
T cd03225 100 GLENLGLPEEEIEERVEEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVL---------------------------- 149 (211)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCC--HHHHHCCHHHCCHHHHHHHHHHHHH----------------------------
T ss_conf 9998699999999999999998699--4666389545999899999999999----------------------------
Q ss_pred CCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 4698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 587 QHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 587 ~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
T Consensus 150 ~~~P~-ililDEPTsgLD~~~~~~i~~~l~~l~~----~g~tii~itHdl~ 195 (211)
T cd03225 150 AMDPD-ILLLDEPTAGLDPAGRRELLELLKKLKA----EGKTIIIVTHDLD 195 (211)
T ss_pred HCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEECCHH
T ss_conf 75999-9999798555899999999999999997----8999999925999