HHsearch alignment for GI: 254780799 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.53 E-value=0.026 Score=36.98 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.6
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
T Consensus 3 ~iaVtGesGaGKSSfINAlR 22 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR 22 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79995589986899999986