HHsearch alignment for GI: 254780799 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.60 E-value=0.00021 Score=52.67 Aligned_cols=141 Identities=20% Similarity=0.199 Sum_probs=78.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999982995784788852310011102770343122334304566899999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~----~~v~~~~~~~~~~~~~~~~~----------------------~~~~ 54 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLL----------------------LIIV 54 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCC----CCEEEEEHHHHHHHHHHHHH----------------------HHHH
T ss_conf 997899999997029999999998726689----96899875998988898765----------------------3000
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHH
Q ss_conf 99999870899689999999988744786677544677654543222332232346986877634468888732100588
Q gi|254780799|r 533 RYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIES 612 (806)
Q Consensus 533 RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~ 612 (806)
T Consensus 55 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 55 GGKKASGSGELRLRLALAL----------------------------------ARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred CCCCCCCCHHHHHHHHHHH----------------------------------HHHCCCCEEEEECCHHHCCCCCHHHHH
T ss_conf 1122105199999999999----------------------------------984499899982750214762079999
Q ss_pred H---HHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 9---99999866414237999965777535543554110251587
Q gi|254780799|r 613 A---VQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654 (806)
Q Consensus 613 ~---i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf 654 (806)
T Consensus 101 ~~~~~~~~~~~~~~~~~~vi~~~n~-~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 101 LLEELRLLLLLKSEKNLTVILTTND-EKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEECC-CCCCCHHHHCCCCCEEEEE
T ss_conf 9999998517657899899995699-5224987707447879998