HHsearch alignment for GI: 254780799 and conserved domain: smart00843
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=99.89 E-value=5.6e-24 Score=199.20 Aligned_cols=63 Identities=49% Similarity=0.894 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEC
Q ss_conf 777703899999999659850001422200117789999999997798680227887267317
Q gi|254780799|r 737 SVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILIS 799 (806)
Q Consensus 737 ~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~ 799 (806)
T Consensus 1 ~~~D~l~~~a~~~V~~~~~~S~S~lQR~l~IGynRAariid~lE~~GiVsp~~g~~~ReVL~~ 63 (63)
T smart00843 1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf 963289999999999808624899999972050699999999999858788779999834249