HHsearch alignment of GI: 254780799 and MMDB domain: 1e9r_A_24-137_224-347_402-437
>1e9r_A (A:24-137,A:224-347,A:402-437) Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli}
Probab=99.76 E-value=8.2e-19 Score=160.02 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=141.5
Q ss_pred HHHCCCCCC-CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH-CCCCHHHHCCC
Q ss_conf 021045666-6667854100202355304774067999999999998299578478885231001110-27703431223
Q gi|254780799|r 435 AINLGKSIE-GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV-YDGIPNLLTPV 512 (806)
Q Consensus 435 ~iaLGKdI~-G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~-Y~~iPHLl~pV 512 (806)
....|.++. |...+.+..+.||+||+|+||||||+.+++||.+++.+.. ++++||||.-.+.. |...+|...+
T Consensus 10 ~~~~~~~i~~~~~~~~~~~~~~H~li~G~TGsGKT~~l~~li~~l~~~~~----~~~iiD~kg~~~~~~~~~~~~~~~~- 84 (274)
T 1e9r_A 10 TREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGD----RMVIVDPNGDMLSKFGRDKDIILNP- 84 (274)
T ss_dssp HCCSSCCCEETTEECCGGGGGGCEEEEECTTSSHHHHHHHHHHHHHHTTC----EEEEEEETTHHHHHHCCTTCEEECT-
T ss_pred HHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHCCCCEEECC-
T ss_conf 86027773168851776656365899927999889999999999985899----8899979667999873457758677-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---C----
Q ss_conf 34304566899999999999999998708996-------899999999887447866775446776545432---2----
Q gi|254780799|r 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRN-------IDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEA---I---- 578 (806)
Q Consensus 513 vTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRn-------i~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 578 (806)
.+.++...+.|.+.||++||++|++.+++| +..+.+ .+++.- +....+++..+. .
T Consensus 85 --~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~l~~~~~-------~~~~~~--i~i~~~~~~~~~~~~~~~~~ 153 (274)
T 1e9r_A 85 --YDQRTKGWSFFNEIRNDYDWQRYALSVVPRMPDGDFSIRSWLE-------DPNGGN--LFITWREDMGPALRPLISAW 153 (274)
T ss_dssp --TBTTCCCCCGGGGCCSTTHHHHHHHHHSCBSCCCCCCHHHHHH-------CTTCCC--EEEEECGGGHHHHHHHHHHH
T ss_pred --CCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHH-------CCCCCE--EEEECCCCHHHHHHHHHHHH
T ss_conf --8877877682222047789999999985237765667799972-------678838--99971700567999999999
Q ss_pred ----CC-CCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC--CC----CCHHHHHC
Q ss_conf ----23-322323469868776344688887321005889999998664142379999657775--35----54355411
Q gi|254780799|r 579 ----YE-TEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV--DV----ITGTIKAN 647 (806)
Q Consensus 579 ----~~-~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv--dv----itg~ikan 647 (806)
+. -....-..=+.+.+++||+..++.. ..+..+...+|..|+++++|||.|+= ++ ....|-+|
T Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~iDE~~~~~~~------~~~~~~~~~~R~~g~~~~~~~Qs~~ql~~~~g~~~~~~il~n 227 (274)
T 1e9r_A 154 VDVVCTSILSLPEEPKRRLWLFIDELASLEKL------ASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRAS 227 (274)
T ss_dssp HHHHHHHGGGSCCCTTCCEEEEESCGGGSCBC------SSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCC------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999863557898079861265541451------658899997366896799996359999987678899999985
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 02515876458664
Q gi|254780799|r 648 FPTRISFQVSSKID 661 (806)
Q Consensus 648 ~p~riaf~v~s~~d 661 (806)
..++|.|++...-+
T Consensus 228 ~~~~i~~~~~d~~~ 241 (274)
T 1e9r_A 228 FRSLVVLGGSRDLT 241 (274)
T ss_dssp CCEEEEEECCTTTE
T ss_pred CCCEEEECCCCCCC
T ss_conf 78769963899984