HHsearch alignment of GI: 254780799 and MMDB domain: 1e9r_A_24-137_224-347_402-437

>1e9r_A (A:24-137,A:224-347,A:402-437) Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli}
Probab=99.76  E-value=8.2e-19  Score=160.02  Aligned_cols=205  Identities=21%  Similarity=0.247  Sum_probs=141.5

Q ss_pred             HHHCCCCCC-CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH-CCCCHHHHCCC
Q ss_conf             021045666-6667854100202355304774067999999999998299578478885231001110-27703431223
Q gi|254780799|r  435 AINLGKSIE-GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV-YDGIPNLLTPV  512 (806)
Q Consensus       435 ~iaLGKdI~-G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~-Y~~iPHLl~pV  512 (806)
                      ....|.++. |...+.+..+.||+||+|+||||||+.+++||.+++.+..    ++++||||.-.+.. |...+|...+ 
T Consensus        10 ~~~~~~~i~~~~~~~~~~~~~~H~li~G~TGsGKT~~l~~li~~l~~~~~----~~~iiD~kg~~~~~~~~~~~~~~~~-   84 (274)
T 1e9r_A           10 TREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGD----RMVIVDPNGDMLSKFGRDKDIILNP-   84 (274)
T ss_dssp             HCCSSCCCEETTEECCGGGGGGCEEEEECTTSSHHHHHHHHHHHHHHTTC----EEEEEEETTHHHHHHCCTTCEEECT-
T ss_pred             HHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHCCCCEEECC-
T ss_conf             86027773168851776656365899927999889999999999985899----8899979667999873457758677-


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---C----
Q ss_conf             34304566899999999999999998708996-------899999999887447866775446776545432---2----
Q gi|254780799|r  513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRN-------IDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEA---I----  578 (806)
Q Consensus       513 vTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRn-------i~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~----  578 (806)
                        .+.++...+.|.+.||++||++|++.+++|       +..+.+       .+++.-  +....+++..+.   .    
T Consensus        85 --~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~l~~~~~-------~~~~~~--i~i~~~~~~~~~~~~~~~~~  153 (274)
T 1e9r_A           85 --YDQRTKGWSFFNEIRNDYDWQRYALSVVPRMPDGDFSIRSWLE-------DPNGGN--LFITWREDMGPALRPLISAW  153 (274)
T ss_dssp             --TBTTCCCCCGGGGCCSTTHHHHHHHHHSCBSCCCCCCHHHHHH-------CTTCCC--EEEEECGGGHHHHHHHHHHH
T ss_pred             --CCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHH-------CCCCCE--EEEECCCCHHHHHHHHHHHH
T ss_conf             --8877877682222047789999999985237765667799972-------678838--99971700567999999999


Q ss_pred             ----CC-CCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC--CC----CCHHHHHC
Q ss_conf             ----23-322323469868776344688887321005889999998664142379999657775--35----54355411
Q gi|254780799|r  579 ----YE-TEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV--DV----ITGTIKAN  647 (806)
Q Consensus       579 ----~~-~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv--dv----itg~ikan  647 (806)
                          +. -....-..=+.+.+++||+..++..      ..+..+...+|..|+++++|||.|+=  ++    ....|-+|
T Consensus       154 ~~~l~~~~~~~~~~~~~~~~~~iDE~~~~~~~------~~~~~~~~~~R~~g~~~~~~~Qs~~ql~~~~g~~~~~~il~n  227 (274)
T 1e9r_A          154 VDVVCTSILSLPEEPKRRLWLFIDELASLEKL------ASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRAS  227 (274)
T ss_dssp             HHHHHHHGGGSCCCTTCCEEEEESCGGGSCBC------SSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCC------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCHHHHHHHHHH
T ss_conf             99999999863557898079861265541451------658899997366896799996359999987678899999985


Q ss_pred             CCCEEEEEECCCCC
Q ss_conf             02515876458664
Q gi|254780799|r  648 FPTRISFQVSSKID  661 (806)
Q Consensus       648 ~p~riaf~v~s~~d  661 (806)
                      ..++|.|++...-+
T Consensus       228 ~~~~i~~~~~d~~~  241 (274)
T 1e9r_A          228 FRSLVVLGGSRDLT  241 (274)
T ss_dssp             CCEEEEEECCTTTE
T ss_pred             CCCEEEECCCCCCC
T ss_conf             78769963899984