HHsearch alignment of GI: 254780799 and MMDB domain: 1uaa_A_1-102_185-277
>1uaa_A (A:1-102,A:185-277) REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli}
Probab=95.87 E-value=0.004 Score=42.58 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=61.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999982995784788852310011102770343122334304566899999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
.-.+++|-|-||||||..+-..+..++++.....-|.+.+=|- +-++++|-+
T Consensus 14 ~~~~~lV~g~~GsGKT~~~~~~~~~ll~~~~~~~~~il~v~~t----------------------------~~a~~~~~~ 65 (195)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT----------------------------NKAAREMKE 65 (195)
T ss_dssp CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS----------------------------HHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCH----------------------------HHHHHHHHH
T ss_conf 9989899980844799999999999998089896049987553----------------------------999999999
Q ss_pred HHHH-HHHCC-----CCCHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEEEHHHHHHH
Q ss_conf 9999-98708-----99689999999988--7447866775446776545432223--3223234698687763446888
Q gi|254780799|r 533 RYQK-MSKIG-----VRNIDGFNLKVAQY--HNTGKKFNRTVQTGFDRKTGEAIYE--TEHFDFQHMPYIVVVIDEMADL 602 (806)
Q Consensus 533 RY~l-~a~~~-----vRni~~yN~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lp~ivviiDElaDl 602 (806)
|..- +...+ ++++.++-.+.... ...+.+ +-... ...... .+....-.-||=.|+|||.-|+
T Consensus 66 ~i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--d~~~~------a~~~l~~~~~~~~~~~~~~~~i~iDE~QD~ 137 (195)
T 1uaa_A 66 RVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK--DLILL------PTLLLQANEEVRKRWQNKIRYLLVDEYQDT 137 (195)
T ss_dssp HHHHHSCTTTTTTSEEEEHHHHHHHHHHHHHHHTTCC--HHHHH------HHHHHHHCHHHHHHHHTTCSEEEESCGGGC
T ss_pred HHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCC--HHHHH------HHHHHHCCHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 9998728422378789609999999999989982899--88887------777651181888998864100010110012
Q ss_pred H
Q ss_conf 8
Q gi|254780799|r 603 M 603 (806)
Q Consensus 603 m 603 (806)
.
T Consensus 138 ~ 138 (195)
T 1uaa_A 138 N 138 (195)
T ss_dssp B
T ss_pred C
T ss_conf 3