HHsearch results for GI: 254780799 and protein with PDBid: 1q57_A
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.90 E-value=0.0024 Score=43.07 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
-.+|+|.||+|||-.+..|.+.+..+. ..+..++.+=|-.-.....+-+..+.+ +.......++.-.+.++.++
T Consensus 244 l~vi~g~~g~GKSt~~~~la~~~a~~~---g~~vl~~s~E~~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 317 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRV---RLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTS---CCCEEEEESSSCHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHTSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHHHHCC---CHHHCCCCCCHHHHHHHHHH
T ss_conf 689863101338999999997454403---983010554578999999999998599---83440133100468999999
Q ss_pred HHHH------------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 9987------------0899689999999988744786677544677654543222332232346986877634468888
Q gi|254780799|r 536 KMSK------------IGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603 (806)
Q Consensus 536 l~a~------------~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlm 603 (806)
.+.. .+.-+++..-++++.+... ..--+||||=+..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~------------------------------~~~~~vvID~l~~l~ 367 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG------------------------------LGCDVIILDHISIVV 367 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT------------------------------TCCSEEEEECTTCCC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH------------------------------CCCEEEEECHHHCCC
T ss_conf 99987513621243266532388999999999983------------------------------695489971243025
Q ss_pred HHCC-----CHHHHHHHHHHHHHHHCCEEEEEEEC--CCC
Q ss_conf 7321-----00588999999866414237999965--777
Q gi|254780799|r 604 MVAR-----KDIESAVQRLAQMARASGIHVIMATQ--RPS 636 (806)
Q Consensus 604 m~~~-----~~ve~~i~rlaq~ara~GiHli~aTq--rPs 636 (806)
-..+ .++...+.+|.++|+.-++|.|+..| ||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~Lk~lA~~~~v~Vi~vahlnr~~ 407 (503)
T 1q57_A 368 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPD 407 (503)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 7775412788999999999999998397499995357421