HHsearch results for GI: 254780799 and protein with PDBid: 1rj9_A

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*

Probab=90.70  E-value=0.46  Score=25.98  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=52.2

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH----HHHHCC---CCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             235530477406799999999999829957847888523100----111027---7034312233430456689999999
Q gi|254780799|r  456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML----ELSVYD---GIPNLLTPVVTNPQKAVTVLKWLVC  528 (806)
Q Consensus       456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v----Els~Y~---~iPHLl~pVvTd~~kA~~aL~w~V~  528 (806)
                      +++++|-||+||.-.+==+ . -.|+..-..+-++-.|--|.    -|..|-   |+|..   +..++++.+.+++|++.
T Consensus       104 vi~lvG~~G~GKTTt~aKl-A-~~~~~~~~kv~li~~Dt~R~ga~eQL~~~a~~~~v~~~---~~~~~~d~~~~~~~~~~  178 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKL-G-RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI---QGPEGTDSAALAYDAVQ  178 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHH-H-HHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEE---CCCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHH-H-HHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEE---ECCCCCHHHHHHHHHHH
T ss_conf             9995246677741189999-9-99865115400342142000067899985655685079---66887207877899999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780799|r  529 EMEER  533 (806)
Q Consensus       529 EMe~R  533 (806)
                      +...+
T Consensus       179 ~~~~~  183 (304)
T 1rj9_A          179 AMKAR  183 (304)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             99986