HHsearch results for GI: 254780799 and protein with PDBid: 2pt7_A
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.80 E-value=0.005 Score=40.70 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=33.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC--CCCHHHH
Q ss_conf 23553047740679999999999982995784788852310011102--7703431
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY--DGIPNLL 509 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y--~~iPHLl 509 (806)
.+||+|.|||||+-++|+++ +.-|++.|.+.|-- -.||..+ +++.++.
T Consensus 173 nilI~G~tgSGKTTll~al~-----~~i~~~~rivtIEd-~~El~l~~~~~~~~~~ 222 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM-----EFIPKEERIISIED-TEEIVFKHHKNYTQLF 222 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG-----GGSCTTSCEEEEES-SCCCCCSSCSSEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHH-----HHCCCCCCEEECCC-CHHHHHCCCCCEEEEE
T ss_conf 58999607999899999997-----32135564333144-0554313577510122