HHsearch results for GI: 254780799 and protein with PDBid: 2qby_B
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.71 E-value=0.22 Score=28.39 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH----CCHHHEEEEEECCCHHHHHHCCCCHHHHCCC--CCCHHHHHHHHHHHH
Q ss_conf 2023553047740679999999999982----9957847888523100111027703431223--343045668999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYR----MTPAQCRLIMIDPKMLELSVYDGIPNLLTPV--VTNPQKAVTVLKWLV 527 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk----~~P~evkliliDPK~vEls~Y~~iPHLl~pV--vTd~~kA~~aL~w~V 527 (806)
-+++|+-|.+|+||+.....+.-.|-=. ....+++.+-++.+.+.-+.+.-+-+|.... ...|+.
T Consensus 45 ~~~~li~GppG~GKTtlar~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------- 115 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKH--------- 115 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSS---------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHCCCCCCCC---------
T ss_conf 86089987998829999999999987650454568884189950044067489999999987433436511---------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r 528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~ 607 (806)
|. ++..+-.++... ..-.+.++++||+-.|+-...
T Consensus 116 -------------~~-~~~~~~~~~~~~-------------------------------~~~~~~~ivlDe~d~l~~~~~ 150 (384)
T 2qby_B 116 -------------GI-NLGEYIDKIKNG-------------------------------TRNIRAIIYLDEVDTLVKRRG 150 (384)
T ss_dssp -------------SS-CTHHHHHHHHHH-------------------------------HSSSCEEEEEETTHHHHHSTT
T ss_pred -------------CC-CHHHHHHHHHHH-------------------------------HHCCCEEEEECHHHHHHHCCH
T ss_conf -------------34-499999998743-------------------------------412670685010556652001
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CCCCHHHHHCCCCEEEEE
Q ss_conf 005889999998664142379999657775-355435541102515876
Q gi|254780799|r 608 KDIESAVQRLAQMARASGIHVIMATQRPSV-DVITGTIKANFPTRISFQ 655 (806)
Q Consensus 608 ~~ve~~i~rlaq~ara~GiHli~aTqrPsv-dvitg~ikan~p~riaf~ 655 (806)
. +....++.+. ....++|++|.+... +-+-.-++..++-++-|.
T Consensus 151 ~--~~~~~~l~~~--~~~~~~I~~~~~~~~~~~~~~~~~sr~~~~~~~~ 195 (384)
T 2qby_B 151 G--DIVLYQLLRS--DANISVIMISNDINVRDYMEPRVLSSLGPSVIFK 195 (384)
T ss_dssp S--HHHHHHHHTS--SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC
T ss_pred H--HHHHHHHHCC--CCCCEEEEECCCHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 4--4566543105--6664289851540367763300343225200158