HHsearch results for GI: 254780799 and protein with PDBid: 2qby_B

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.71  E-value=0.22  Score=28.39  Aligned_cols=144  Identities=15%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHH----CCHHHEEEEEECCCHHHHHHCCCCHHHHCCC--CCCHHHHHHHHHHHH
Q ss_conf             2023553047740679999999999982----9957847888523100111027703431223--343045668999999
Q gi|254780799|r  454 MPHLLIAGTTGSGKSVAINTMILSLLYR----MTPAQCRLIMIDPKMLELSVYDGIPNLLTPV--VTNPQKAVTVLKWLV  527 (806)
Q Consensus       454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk----~~P~evkliliDPK~vEls~Y~~iPHLl~pV--vTd~~kA~~aL~w~V  527 (806)
                      -+++|+-|.+|+||+.....+.-.|-=.    ....+++.+-++.+.+.-+.+.-+-+|....  ...|+.         
T Consensus        45 ~~~~li~GppG~GKTtlar~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------  115 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKH---------  115 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSS---------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHCCCCCCCC---------
T ss_conf             86089987998829999999999987650454568884189950044067489999999987433436511---------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf             99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r  528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR  607 (806)
Q Consensus       528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~  607 (806)
                                   |. ++..+-.++...                               ..-.+.++++||+-.|+-...
T Consensus       116 -------------~~-~~~~~~~~~~~~-------------------------------~~~~~~~ivlDe~d~l~~~~~  150 (384)
T 2qby_B          116 -------------GI-NLGEYIDKIKNG-------------------------------TRNIRAIIYLDEVDTLVKRRG  150 (384)
T ss_dssp             -------------SS-CTHHHHHHHHHH-------------------------------HSSSCEEEEEETTHHHHHSTT
T ss_pred             -------------CC-CHHHHHHHHHHH-------------------------------HHCCCEEEEECHHHHHHHCCH
T ss_conf             -------------34-499999998743-------------------------------412670685010556652001


Q ss_pred             CHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CCCCHHHHHCCCCEEEEE
Q ss_conf             005889999998664142379999657775-355435541102515876
Q gi|254780799|r  608 KDIESAVQRLAQMARASGIHVIMATQRPSV-DVITGTIKANFPTRISFQ  655 (806)
Q Consensus       608 ~~ve~~i~rlaq~ara~GiHli~aTqrPsv-dvitg~ikan~p~riaf~  655 (806)
                      .  +....++.+.  ....++|++|.+... +-+-.-++..++-++-|.
T Consensus       151 ~--~~~~~~l~~~--~~~~~~I~~~~~~~~~~~~~~~~~sr~~~~~~~~  195 (384)
T 2qby_B          151 G--DIVLYQLLRS--DANISVIMISNDINVRDYMEPRVLSSLGPSVIFK  195 (384)
T ss_dssp             S--HHHHHHHHTS--SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC
T ss_pred             H--HHHHHHHHCC--CCCCEEEEECCCHHHHHHHCCCHHHHCCCCCCCC
T ss_conf             4--4566543105--6664289851540367763300343225200158